Array 1 97306-96150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPV010000003.1 Dickeya dianthicola strain DDI_16NJ12 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 97305 32 100.0 36 ................................ AGCTCCTCATCAGTTGCCTGCCCGTCAGCATGGCGC 97237 32 100.0 35 ................................ TTTTTGTGAGTGCCTGTAGTCTTTATCTCAAGCCA 97170 32 100.0 33 ................................ TTGTTTTTTGTCAGGATGTAATTCTTTTTTCTT 97105 32 100.0 34 ................................ TTCAATATATCGGTCACGAAGGACAGACGGGGTT 97039 32 100.0 33 ................................ CCTATCACGCTGATCCAGCTTCAGGACATTTAT 96974 32 100.0 34 ................................ TTCTTCATTTTTGTTTTGCTTTTTTTTTTTTTTA 96908 32 100.0 35 ................................ TGGTTAGTTACGTTCGTGAAGCGGATCATTGAGTT 96841 32 100.0 33 ................................ AACCATGCGGCGCAGGGTAACGTTGCCAATCAG 96776 32 100.0 33 ................................ CCTTCAGATGATGTGTTTGTTGCCTTTTTTCTT 96711 32 100.0 35 ................................ TTTTTTACCTTACTTCTGGTCTGGTTTGGTGTTTT 96644 32 100.0 36 ................................ TTTTGAGNTCTTTTCTATTCAGCTCGAACGTGATGT 96576 32 100.0 35 ................................ CATTTCATCCTGCTTTTTAACGCCAAGCTTTTCTT 96509 32 100.0 33 ................................ TGTATCAAGTTCCAGACCGAAATGGACGGCCTT 96444 32 100.0 35 ................................ TGTCACTGGCTCCCATGCCTTGCGATTGGNCTTTC 96377 32 100.0 34 ................................ TTTTTATTTTTTTCATTTTTTTTTTTTTGTTTCT 96311 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 96245 32 100.0 33 ................................ CAGTACGAACCGTACATCTTGTCAACTAGCCAC 96180 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 278310-277916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPV010000003.1 Dickeya dianthicola strain DDI_16NJ12 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 278309 28 100.0 33 ............................ CAGGAGGTACTAGTATGACTGTTAGACTGAGTA 278248 28 100.0 33 ............................ TCCTTCAGCGCAGAGTACGGCGGATACATCTGG 278187 28 100.0 33 ............................ GCGACGGCACCGCGTTGTTCAACAACTGCGATC 278126 28 100.0 33 ............................ TCTGTTCACCAAGTACCAGGATAACTTCGGCAT 278065 28 100.0 33 ............................ TTTCTCGTCGGCGCTCATTTTTCCATTCAATCG 278004 28 100.0 33 ............................ CGTAAACCTGCTGCGCGTTTTACTTCGCTTTCA 277943 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TATTGGTTCTTTAGCCGTTTTAATTTCTGAAGCCAGCAATATTTCACTCAATATTGCAGCTAACATCATCGAAGTTACAGGATCAGAGAAATTTGATCACGAATATCTCTCTGGCTTCTTACGCATCTGTACGAACCTCTATCCCGATCACCAAGAACGATTTGAAAGGGTTATTGGCTCTCGTTATTTTATTAAAAAGCTTATTTCCTGTTTTTCACAGCATACTCTTGAACTTCTTCTAGACGAATTAACCCATAATCTTCATTGCCATTGTGGGAAAAGATCCTTTGAGTGTGATTGTCGCAATGGAATAAGCAAGATCGTCGGTTCAATGGTTGATCGCTATTTTGAATTAGCTCAAGCGCCATTTGACCCTGTGAGGATATGGCAATGGACAGGTAATCTCAACTTTCATCATCAATGTCAGCCCGAACAAAGCAAANTCCCCACGCACGTGGGGGTGTTTCTGAAATAGCTCTGTAAGCCTTGCTGTTACTGGG # Right flank : CGATGTCAACAACGGGTAAAAAGTGATCCACTTACCGTCACCACCAACGGTTTAATATTGATCCACCTTGTTTACTCAGGATTAGCTTCTGCGATAACCCCGGCTTTGCGTTTCTGCTTCAGTCTATAGCTCTCCCCCTTTATTTGTACGACGTGCGAGTGGTGTAAGATCCGGTCCAGCATCGCTGATGTCAGAGCTGCATCACCGGCGAACGTCTGATCCCACTGCCCGAACGGCAGGTTAGATGTCAGGATCATCGCGCTCTTCTCGTAACGTTTGGCGATGACCTGGAAGAACAGCTTTGCCTCTTCCTGACTGAACGGCAGATAGCCGATTTCATCGATGATGAGCAGCTTTGGTGCCATCACGCCACGGTGAAGCGTGGTTTTATAGCGACCCTGACGTTGCGCCGTTGACAGCTGAAGCAACAGGTCCGCCGCCGTTGTGAAGCGAACCTTGATGCCCGCACGCACTGCCTCGTAGCCCATGGCTATCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 228749-228180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPV010000011.1 Dickeya dianthicola strain DDI_16NJ12 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 228748 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 228688 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 228628 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 228568 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 228508 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 228448 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 228388 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 228328 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 228268 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 228208 27 89.3 0 .......................-..CG | GG [228185] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 237464-239058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPV010000011.1 Dickeya dianthicola strain DDI_16NJ12 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 237464 28 100.0 32 ............................ TCTTCTGTGAGTTCGCGCACTTCAGACAATGT 237524 28 100.0 32 ............................ GTGCCGCCGCCAATGCTGTCGCTGTCGCCGCC 237584 28 100.0 32 ............................ GGTGAAGTGCATGGATTCTTTTTCCTGGCAGA 237644 28 100.0 32 ............................ TTTACAGGCACGGGCATCAAAAATCTCTTTCA 237704 28 100.0 32 ............................ ACTTCAACATCACCGGTATCAATGCGCCGTTA 237764 28 100.0 33 ............................ AGGAAAATNNNCAAAACTGACAGCGCCAGAAAA 237825 28 100.0 32 ............................ TATCGAGATGACATTGACAGAATGGGTTCGCT 237885 28 100.0 32 ............................ TGTAATATGTTTGCGGATGAGTAAACAAAGGC 237945 28 100.0 32 ............................ TTCATATCTGCGAGAGCCATAATCTCTTATCC 238005 28 100.0 32 ............................ AAATCAGACGCGCATTCTGTCGGTTGTCGGGA 238065 28 100.0 32 ............................ GACGGGATGCCGAAATGGCGCCCACGGCAACC 238125 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 238185 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 238246 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 238306 28 100.0 33 ............................ CACCCGCGANAAACCAACAGAATCTGACCTGAT 238367 28 100.0 32 ............................ TGCAAAAACCACACCAGCGGCGATGAGCAAAT 238427 28 100.0 32 ............................ AAATCAACCGCNAGCACCGGCCACCACAACAA 238487 28 100.0 32 ............................ CCGATCGAAAGCCCGCCGGGCGCTGAAAAAGC 238547 28 100.0 35 ............................ AGATATATCCACACCAGCGGCNCGATCTGATAGCA 238610 28 100.0 32 ............................ TACAAAGTGGGTGTTGTGTGATTACGTAAAGT 238670 28 100.0 32 ............................ GCCGAGACTACCGCCGATGCCGCTGCCCGTGC 238730 28 100.0 32 ............................ GTGCCGCCGCCAATGCTGTCGCTGTCGCCGCC 238790 28 100.0 32 ............................ GGTGAAGTGCATGGATTCTTTTTCCTGGCAGT 238850 28 100.0 32 ............................ TTTACAGGCACGGGCATCAAAAATCTCTTTCA 238910 28 100.0 32 ............................ ATAAAGGGTGGCGCATGAATATCTGTCAAGAC 238970 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 239030 27 85.7 0 ....................G..-..CG | AG [239048] ========== ====== ====== ====== ============================ =================================== ================== 27 28 99.5 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //