Array 1 37651-39359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTMX01000036.1 Pseudomonas aeruginosa strain AZPAE15049 AZPAE15049_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37651 28 100.0 32 ............................ TTGGAAACAGGGCTGCTTTGGATGTACCCAAG 37711 28 100.0 32 ............................ TCTTCGCCGCGCTGGATTCGAAGGAGCGCCGC 37771 28 100.0 32 ............................ ATGTAGCCCAGCCCCAACGGCAGATCGCCAAC 37831 28 100.0 32 ............................ GATCACTCCCCGCTGCGCATGCAGCGTTCCCC 37891 28 100.0 32 ............................ TGAGAGATCGGGCGCTTTGGGATGTGACCAAC 37951 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGGTGCTG 38011 28 100.0 33 ............................ TTAAAGGTGCGTGATGGAATGGCTCGGCGCGAT 38072 28 100.0 32 ............................ TCAACGACCGCACAGTTACTCAGTACGTCGAC 38132 28 100.0 32 ............................ AAGCGGCAGGCATCGGGTGCTCAGGCATCTGA 38192 28 100.0 32 ............................ ACTCTGAATGCAGGCGCGAAAGCGCCTCACCC 38252 28 100.0 32 ............................ TCGAAGAAATCACCATCAACGCGTAGGAGAAC 38312 28 100.0 32 ............................ GGTAGTACTGGCCGCGATCACGGTGCCGGACG 38372 28 100.0 32 ............................ AGCACTTCGGACTCCGACATGGCCGTGATGGA 38432 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 38492 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 38552 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 38612 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 38672 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 38732 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 38792 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 38852 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 38912 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 38972 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 39032 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 39092 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 39152 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 39212 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 39272 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39332 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48503-47875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTMX01000036.1 Pseudomonas aeruginosa strain AZPAE15049 AZPAE15049_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48502 28 100.0 32 ............................ GCCACAATTCGTCGAGGACCAGGACCGAACCA 48442 28 100.0 32 ............................ ACGCCGAGGAAGCCAACGAAGCCGCCAGCGAA 48382 28 100.0 32 ............................ AGCAACGTGGCCCAGCTCGCCAACTGATCGAG 48322 28 100.0 32 ............................ ATGCGCACGCGGGCCTTGGTCAAAGCTCCCCC 48262 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 48202 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 48142 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 48082 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 48022 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 47962 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 47902 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //