Array 1 71077-72136 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNSE01000001.1 Bifidobacterium dentium JCM 1195 = DSM 20436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 71077 36 100.0 28 .................................... GAAATACGTCTACGAGCGGTTCCGTTTC 71141 36 100.0 28 .................................... GCATCGAAAGCCTCTGCGAAGACATTCG 71205 36 100.0 28 .................................... GCGCCCCGACCATCCCGACACGAAAGCC 71269 36 100.0 28 .................................... CTTATCGCCGGATTGTTGCGCGGCGAGA 71333 36 100.0 28 .................................... AGTCCTTGCCATTATGGTCGGCTGGCAC 71397 36 100.0 28 .................................... GCTTCGCGACTGTGGAGCGGGTTGCGGA 71461 36 100.0 28 .................................... CGTGTCGGACGTGGACGGCGTGCTCTAC 71525 36 100.0 28 .................................... CTTGTCGGCGTGTTCGCCACGGCTCCGA 71589 36 100.0 28 .................................... TTGCGAGCAGTGCAATGCACGTCGTCTC 71653 36 100.0 28 .................................... TTTCCCGGCATCTTTCCTCTCGTGGTTG 71717 36 100.0 28 .................................... GGCGACGTACACTTCCTTGGCGCACATG 71781 36 100.0 28 .................................... TGTTTTTCCACATCACGCCTTTGCGGCA 71845 36 100.0 28 .................................... ACGAATTCCTTGAAAACCTGATCCGCGC 71909 36 100.0 28 .................................... CGCAGGAACTGTATTCGCTCGTATACCA 71973 36 100.0 28 .................................... AATGGTACGTCCGTTAATGTCTTCCGAT 72037 36 100.0 28 .................................... TCAACCCGGATAATGAGTCGTTGCCGTT 72101 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 17 36 100.0 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGGCATGGGCTACAGCATGGTGCAGTATTCCGTATACTCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTGAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : TACATCGACGAGTTGGGGACCGAGCTCTCCAAGTTTATCCACTATCCCAAGGAGATACGAGCTAATGGAACGCACAGTCACATTTGAAGATGAGGAGTCCGTCAGGGCCTTTTTATTGGTGTCATCATCGGTTACGTCATCATGTCTGTGATTCTGCATCCATTGCATGCGCTGTACTGGATTTCGAGGATCGCAGGCGTCTGCTGCATGTTTTACGGTGTCGGGTCATCCGTGTATCCGGCAAAGGGATTCGATTTCCTCATTCTCGGCGTGGCATCATTCTACATTCCAAAAGGCTGGATTCTCCATGGCATCCCCGTTCGAAGATGCCATGCGGCTTCTCGCCTTTTAATCGGCATTCAGGAAAGATGCGTATCTTCCCAGCGCGGACAGGAGATGGTCCTTCCTCGTTCGTTTCGGATCGATGACGGGCATTCCCTCTCGAATCCGGCTGTAAATGGGTGAGAATGCGTCGTATGTGTCATATGAGAACACGGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 2269408-2274784 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNSE01000001.1 Bifidobacterium dentium JCM 1195 = DSM 20436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2269408 33 100.0 33 ................................. AAGTCGTTGTTCATGTGGACACGCCAATATCCG 2269474 33 100.0 35 ................................. GCAGAAGGTCACGATGGATGATGCAACGTTTTACA 2269542 33 100.0 33 ................................. CTTAACCGTACTCCGGCCGCGGCTGGCGGACAG 2269608 33 100.0 33 ................................. GAGAAAAGGACTAAACAATGGCTACCGTATACA 2269674 33 100.0 33 ................................. ATGACACTTCCACCGCCCGTACCATGACGGGAA 2269740 33 100.0 34 ................................. CTGCAAATGACGAACGTGCTGTCGGATGAAGCGT 2269807 33 100.0 33 ................................. GTCCTCGACCGCGACCATGCCCGAATCGTTTGG 2269873 33 100.0 34 ................................. ATTTATTTGCGCCGCACCGACGTGGAACAGCACC 2269940 33 100.0 35 ................................. AAGGATTGAGGTGAGCTCGATGAGGCAAATGCCGC 2270008 33 100.0 33 ................................. TCGGGGAAGCGGTACGAGCCACGGTGCGCGTGG 2270074 33 100.0 33 ................................. CATTCGATGCCGATAGGGTGCCCTGAGTCTGCC 2270140 33 100.0 34 ................................. ATAAAGTCCCTGTAAGTGATGGAGGACACGTTAG 2270207 33 100.0 33 ................................. TCGGAGGAGCTGCTCGTAGTAGTCTTCGAATCC 2270273 33 100.0 34 ................................. TCTCTGCAGCACGCGCATATTCGTGGATCAGCCG 2270340 33 100.0 35 ................................. AACGACGGCAGCTCGCACGTGGAATGGATCACCGA 2270408 33 100.0 34 ................................. TTGTCCGGCGACATCGGCGGCGGCATCAGCGCCA 2270475 33 100.0 34 ................................. ATCCAGACATGCGATTATGTCAATGCCCACACCA 2270542 33 100.0 34 ................................. CGCTTTGAATGGCAGGTTCGGGATGCCGAGTCCG 2270609 33 100.0 34 ................................. CAAGTCATCCAGCGTTTTGCCAATACGCTCGAAT 2270676 33 100.0 34 ................................. TACAAGCATAGGGGGTCTATCACCCCTAATCCGT 2270743 33 100.0 32 ................................. CAGCTCGGCGACGCGGACGGCCAGATGCTCAT 2270808 33 100.0 34 ................................. CCCGATTGGGAGATGAGGATCCGTGGCCGCGTCA 2270875 33 100.0 34 ................................. TCCGGCCCCCAGCCGAGCTCTTCCCACGCCATTT 2270942 33 100.0 34 ................................. TCACCCCGGTAGGCCCAGTCGATGGGCAGTTCCC 2271009 33 97.0 35 .............G................... ACTGCGACGGCTTGCGCTTGCATGCACAGTAACCC 2271077 33 100.0 34 ................................. GATTGCCTTGTGTTGGCATTCGTCGTTGGATGAT 2271144 33 100.0 34 ................................. CATTAAGAGTGAAGTTGCCAAGACGTATGCGACC 2271211 33 100.0 34 ................................. GACATGCTGGGCCATGATATAACCGCCTTAAAAA 2271278 33 100.0 34 ................................. ACATCCACGAGCAACTGGCGCGTCGTATATAAAA 2271345 33 100.0 35 ................................. TGGTCGGCGGTCATCATCAGTCTTATCGGCGGTGG 2271413 33 100.0 33 ................................. GGCGTGTACGCCGTCAGATAGGCCGTCGCACCC 2271479 33 100.0 33 ................................. ACAAACCCATTGCCGAAACTGCTCAACACGACA 2271545 33 100.0 35 ................................. ATGATTTGGAGCCTAAAAAATCAAAAGTATTGTAC 2271613 33 100.0 33 ................................. GATGTGAAATTCGACGTGGACCGGACCAGCTTC 2271679 33 100.0 33 ................................. GCAACCTTACGCGCCGCCATCATGTGCAGTCGA 2271745 33 100.0 34 ................................. GCCTCACGCGAACGAATAGCATCGGCGGAGGCCG 2271812 33 100.0 33 ................................. ACCAAATACGTGTTTAAGGTGCAAGATGATTGC 2271878 33 100.0 34 ................................. CCGTCACCGATGCGGAAGTGGAAGCCTCCGCCAA 2271945 33 100.0 34 ................................. TTCTTTCTTATTACTACTACTCCTACTACTACTA 2272012 33 100.0 34 ................................. ACCATGCGTTTGCAGTCCTGCTTGCGCTTGTAGA 2272079 33 100.0 33 ................................. AAATGCCGGTATCTGCCCGGGATATGGAAGTTG 2272145 33 100.0 34 ................................. CTGGTGCCGTCAATCGGATTGACCGGCGAATTGG 2272212 33 100.0 35 ................................. ACCTTATCGTAGGCTACGGGGTCGTTGATCAGCCA 2272280 33 100.0 33 ................................. CTGCTGGCCATATGCCTGGAATCGCGTGGGTTG 2272346 33 100.0 34 ................................. CTCGATTTCGGTTTGCATGTGGGTCAGGATCCGG 2272413 33 100.0 34 ................................. CTCAACAGGCTGACCATGGCGTCGGTGGTCGCGT 2272480 33 100.0 33 ................................. TCATACCGTGATACGCTTACCGTACTCGGCTAC 2272546 33 100.0 33 ................................. GTTGAGCGTCCGTAACGCCATGGTCGCCTCCCC 2272612 33 100.0 36 ................................. ACTGCTTGCGGTGGCTGTCGAGTCTTGCGTGGTGGC 2272681 33 100.0 34 ................................. GCCTTGACCTCACGCGACATGAAATCGGCGTAGG 2272748 33 100.0 33 ................................. ACCAACGAACAGGTGAGCGCGACCCTGTTCGCC 2272814 33 100.0 34 ................................. CAGGATGGATGTCAATTCGATGAGGCAGATGCCG 2272881 33 100.0 34 ................................. CAACCATTTGCGGAACGTTGGTCATATTATCCCC 2272948 33 100.0 34 ................................. TTATGAAAGGTGTGAACATGAGCAGACGGAACAA 2273015 33 100.0 34 ................................. GGGTGCGGCGAATGCGATCGGTGCGGCCGCCACC 2273082 33 100.0 34 ................................. CTATCCGCAAATCGGCTCGAAAGAGTGCGTACCC 2273149 33 100.0 33 ................................. GCGCATGGTGCGGCCCAGGTAAAAGACGAACAT 2273215 33 100.0 34 ................................. GTGGACGGCTCGGGCGCTGATGTCCACAAGCTGG 2273282 33 100.0 33 ................................. TGGTTGGTCTTGCGTCTGCGTCGAGTCCACGTC 2273348 33 100.0 33 ................................. CTCCGGACAGGTCGAACTACGGAGATACATTTC 2273414 33 100.0 35 ................................. AATAACTGATGCCGGACAGTGGCTCGTTGTCGCCG 2273482 33 100.0 35 ................................. ATTGGCCAGCACGAACCTTTCGAACCAGCAGACCA 2273550 33 100.0 35 ................................. AAGCCAAAATAGTCGGCAAACCACCATACGGTTAT 2273618 33 100.0 34 ................................. TCCGTCGAGAGTGTTCCGTGATCAGGTCGGCGTG 2273685 33 100.0 34 ................................. ATGGCAAAGTCCCTGCATGCGCGTCTCGTGGCCT 2273752 33 100.0 33 ................................. ACGTAATCGCACGTCTGGACGAAATAATACCAA 2273818 33 100.0 33 ................................. GCTTTCGCGCCGACGGTCAAGATCACCCGCAAA 2273884 33 100.0 33 ................................. TACACGGCAAGCGTCGGCATCCGCGGCGTATCA 2273950 33 100.0 33 ................................. ACGTGATGACGCAGGTCGCAGTCGATGACATGC 2274016 33 100.0 33 ................................. GACAAGGACGGGTATTCGCCGCCATCAGGCGGC 2274082 33 100.0 34 ................................. CTCACCGGCGTCAACGGCACGGGGAGCAAGACAT 2274149 33 100.0 33 ................................. CTGTCCGGCGACATCGGCGGAGGCATCAGCGCC 2274215 33 100.0 33 ................................. CGATTTGGAACGTGAGATAGCGGAGAACATCAC 2274281 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 2274349 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 2274417 33 100.0 34 ................................. ATGCACGCGCACACCGACATCCGCAGGGAGCAAT T [2274443] 2274485 33 100.0 33 ................................. ACCGACGTGGCATGCGGCAACGACTACACTCTT 2274551 33 97.0 34 ......T.......................... TTCCGATCGAAGAGTCCGCTGTCGTTCTCGGCGA 2274618 33 100.0 35 ................................. GAGGACAGCCTGGAGGGCTGCTACGCGCTCATGCA 2274686 33 100.0 34 ................................. ACGCCGAGCTCCCGGTCCCCCGTCGGCCCTGGTG 2274753 32 84.8 0 ....................T.-A....A...C | ========== ====== ====== ====== ================================= ==================================== ================== 81 33 99.7 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : CATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGATGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCAGCCGGCGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATCGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTTATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTTCACGGTTGGAGCGCCATGGCGGGACGATGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //