Array 1 167579-166939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVKC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain CH36 isolate CH36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167578 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 167517 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 167456 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 167395 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 167334 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 167273 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 167212 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 167151 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 167090 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 167029 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 166968 29 96.6 0 A............................ | A [166941] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185264-183711 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVKC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain CH36 isolate CH36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185263 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 185202 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 185141 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 185080 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 185019 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184958 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 184897 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 184836 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 184775 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 184714 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 184653 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 184592 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 184531 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 184470 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 184409 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 184348 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 184287 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 184226 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 184165 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 184104 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 184043 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183982 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183921 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 183860 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 183799 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 183738 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //