Array 1 153937-154941 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUT01000004.1 Escherichia coli strain MOD1-EC5005 MOD1-EC5005_4_length_219934_cov_26.1549, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153937 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 153998 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 154059 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 154120 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 154181 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 154242 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 154303 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 154364 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 154425 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 154486 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 154547 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 154608 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 154669 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 154730 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 154791 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 154852 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 154913 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180683-181748 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUT01000004.1 Escherichia coli strain MOD1-EC5005 MOD1-EC5005_4_length_219934_cov_26.1549, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180683 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 180744 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 180805 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 180866 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 180927 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 180988 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 181049 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 181110 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 181171 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 181232 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 181293 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 181354 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 181415 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 181476 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 181537 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 181598 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 181659 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 181720 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGTGTGTTCCCCGCGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //