Array 1 128642-128800 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIF01000007.1 Streptococcus salivarius K12 plasmid pRSSL1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 128642 27 100.0 39 ........................... CTTGTACTTTAAAGGTTAACCTTCCTCTAAGTTTTAGTG 128708 27 96.3 39 ................G.......... TAAATTTAATTAAAAAGAGCTAATACTTTAGTTTTAGTA 128774 27 96.3 0 .................A......... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 97.5 40 CCATGTCAAATAGAACAGTAACAAAAC # Left flank : TCTACCCAAACTCAAAACAAAAAAAGCATAACAAAGAAGCCGGCAAGCCTTGTCTCAAAAAACAAGGTTGCGCGTGCCTATGGCAAACCATAGGATAAACTTCTCGTTATGCTTACTTGCTAATAACGTTTGTTGTAGCCTTTCAATCAATTAGGCAAATATCTCGTACCTGTTTCAAAGCGTCAAGCCTCTTCTTCTGTCTGATGACTTAACTGATAGCTAAAAGCGAGTACGCTCCCTTTTAACCCATTATAAAACATGGTATGCCTATTGCTGGGACAGAACCAGTAATGACATCTCCTCCTCCATGTTTCCTCTTTTCTTTAGTCACGTGACCAAAGGTTCACCGTTTGAGGTGGTGAAAAAAAGATATAAATTAAAAATTTATGTCTTTAGTATAGCAAACACATAAAAAAATAGCAACCTAAGAATAAAAGTGACTTACCGTAAAATAAAAAAAACACCTAAAAGGTGCATGATATACAGTTTATGTTTTAGTT # Right flank : CCTCGACATGGACCAGCTCCCGACCTTCTTGCCTTGGCTTCCGGTTAGGCTATCTGGTATTTACAAGGTTATTCATAATTACCTTGAAGGTTCCTAAATAAACCTTTTTAGTTATTATAACATATTTATCGTTTGAGGCAAGGAATCAAGCAAATAACCCTATATCACTTATTCTTATGTTTAATCTTGTTCAGTTTAAGGTCTTTGAAAGAAAGTTTATTCTCTAAAATAGCCACAAATTCATATGGAGCATTAAACATAATTTCAAAGCCTTTTTGTTTACGCTGGTCAAACCAAGACATCTCTTCTGGGTTATAATCCTTACGGGATTGCAAGGATTTGAAGTCCTCTTGATAAAGAGTAAAGGTATCACCCAACATCAAGATCTGATTAGCAATCCGTCCAAAACGGTTCTTTCGTGCTTTTTTTACCTTATGCCAGATATAATGTTTTTGGTCTAGAAGTTTCTTATAGGCTGAGTCCTGCACCCATGCTCTCTT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATGTCAAATAGAACAGTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 104620-103595 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIF01000006.1 Streptococcus salivarius K12 Contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104619 36 100.0 30 .................................... TAACTACAAGACTCTTAATACACTTCTTGT 104553 36 100.0 30 .................................... AAACCTAAGAACGACCAGGAAGCTAAGAGA 104487 36 100.0 29 .................................... TCGTTCTCAGCTACCTTGCTACAAGGTCT 104422 36 100.0 30 .................................... AGCAGATTTCGAGAATCTACACCGTCAACC 104356 36 100.0 30 .................................... CGAAGAAGTCTTGATGATGAATCCCTTGAC 104290 36 100.0 30 .................................... TACTGCCCTTAAGAAAGTTAAGAATGCTAT 104224 36 100.0 30 .................................... AGGGCCATGCGTAACTATTTGATGTTGTAA 104158 36 100.0 30 .................................... AATTAAAAAAGTTATCCAAGCACAAGGTAG 104092 36 100.0 30 .................................... ATACCATCCTCTCTATGTAGATGGTGCTAG 104026 36 100.0 30 .................................... TAATGGCTAGCGATACCACTAACAGAATTG 103960 36 100.0 30 .................................... CTAACTTGGTGCCAGTTTTGCCCAAATTCT 103894 36 100.0 30 .................................... ACCATTCGATGGTCGTAAGGTTATTCAAGG 103828 36 100.0 30 .................................... AATATTTTGAGCGATACAAAGACACATACA 103762 36 100.0 30 .................................... GTCTATCTCGACAGATTCAGCGCCATCAAT 103696 36 100.0 30 .................................... AGACTTAACACCTGTACCTAAAGAATTAAC 103630 36 94.4 0 .............................T...T.. | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TAAAAAGAGAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTTGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTCTGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAATGGGATTATTTTGAAGCTGAAGTCAAGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAGACAGTCTACGAG # Right flank : CTTTGTTATGACGATTTTCGGTTGACTTCTCTTAAAACTCATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGATATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTAGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGCTTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1127805-1126393 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIF01000001.1 Streptococcus salivarius K12 Contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1127804 36 100.0 38 .................................... CGCCACTTGAAATTAGATTACGGAAAATTTGCACATTT 1127730 36 100.0 36 .................................... CATAAGAGCAAACATATAGAATATCACTTAGTTTCA 1127658 36 97.2 38 .....................C.............. TGTTGTGCTTCTGTCAATTCTGCGAACGCTTTACCAGC 1127584 36 94.4 34 .......C.....T...................... ATCTTTGTAGCTCCCTTTCTTTATCTTACATATC 1127514 36 100.0 36 .................................... TTGGAAAAACTGTTTATAAGAGCCTTTTTTGTGCGT 1127442 36 94.4 37 .............T.......T.............. ACAGCATTTACAAGCTTAGTCTTGTAGTACAAGTAAA 1127369 36 86.1 33 ............AT.......C.......A....G. AGCCTGGCGAGCTACCCAACTGCTACTACCCTG 1127300 36 83.3 37 C.....C.T....CC......C.............. CTAGACCTAATTCGATTTTTCCTTGATTGTTTGCCAT GT [1127296] 1127225 36 86.1 35 .............CC...CT...C............ TATTTGTCTGTAAGTTTGTAACTTGAAATGTCATT 1127154 36 94.4 36 .............C.......C.............. AAACGACCAGACAAAACGACATTATTCATAAGATTT 1127082 36 91.7 37 .............TC.................T... TTCTTCTTCTTGAGTTTCTACGTCATTCTTTTCGACA 1127009 36 94.4 36 .............C.....T................ TGATTATTTTGATAAAAGGTTAAACCAACATCACCG 1126937 36 97.2 39 .............C...................... GCAAGCGACGCTGACTGAGCAGTCTTTCCATAGAGAGCG 1126862 36 86.1 38 .............CC......G...A......T... AGCATATTACTGTTAACTAGTTCTTTAAGTTCACTTAA 1126788 36 94.4 36 .............T.......C.............. TGATTTTTAAATCTTCCTCATAGCGTTCTTGATTAG 1126716 36 94.4 35 .............TC..................... TGTCTGTTCATTGTAACCGTTGTTCCCAAGTTACC 1126645 36 88.9 37 ............CCA.................G... ATATTTTTTTGCCTGATCGGGCTTTTCTGCTAAGAGT 1126572 36 91.7 36 .......C.....TC..................... AATAGCCCAGATTGCTCTAAAATCCACTCGAAGACT 1126500 36 77.8 36 ..A...C......TC....T.CA............A TCGCTTGGTGTGACTGTCACGTTGCCAGCGTTGTCA 1126428 36 72.2 0 .......T.A...C...............TTTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 20 36 91.2 36 GATATAAACCTATATACCTCGAGAGGGGACGGAAAC # Left flank : AAGAGTTTATTAGGGCTTTTAGAGAACTTGACCCTAGTCTGTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGTGAAGAAGAACGTGAGTTTGCCAAACAAAAAAACATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGTGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGACTATCAGTCTCTTCTTAATGATATCGAGAGCTTCTACAAGGCTGATGAAGAAGACAGCATAATCGTATATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGTCTAGGGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAGGGAGTCAAATGAAAAAATTAGTACTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACTAAGGTAATCCAAGGAAAAGAGGACACGCAGTGGGTTGTGCATCTGCTCACAGATGACCTAGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGACCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAGA # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATATACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //