Array 1 309628-306640 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSBN01000003.1 Bifidobacterium longum strain AF04-13 AF04-13.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 309627 36 100.0 39 .................................... ACCGTGCTCGACACCGACACCACCACAGTCGGCAAGCAA 309552 36 100.0 37 .................................... AGACACGGGCAAGGGTTCAATGTGGGTGTGGTCTGAA 309479 36 100.0 35 .................................... TACCTCACTTGGAAATGCCTGCGTAATGGACGCCG 309408 36 100.0 39 .................................... GGCGCGCTCGAGGGCGGCGCTGGAACCGTGGGCGAGGGC 309333 36 100.0 35 .................................... TTGAGTACATTCGCCTTATCGGTGATGTCCGTGCC 309262 36 100.0 34 .................................... GGTGCAGGCGACCGCCACTGCGACCATGATTGAC 309192 36 100.0 35 .................................... ATGTTCGTCGTGAGCTTGACGATCTCGCCGTCCAG 309121 36 100.0 35 .................................... GATGAAATGCACGTCTTATATGGGGAGGGTACCAC 309050 36 100.0 35 .................................... GCCTGAGATGCACGCTGGAAAACACTCAACGGGTT 308979 36 100.0 36 .................................... ATCACATTGTTTCTGTTTCGCCAAACAGCTCACTAA 308907 36 100.0 36 .................................... TTGACTGGATATGTGATGTCTGCGGATAAAGTAATC 308835 36 100.0 36 .................................... CAAAACCCAAGAGAACAAAACCCAAGAACAATCCCC 308763 36 100.0 35 .................................... ACGAGCCGCGAGGACCTCAGGGCCACCGTCGCCAA 308692 36 100.0 37 .................................... CTTCGTCAGATCGCTCGACTGGTCCGGGCGAGGATTC 308619 36 100.0 35 .................................... CAGTGGACGACCACGCGGGCCGCCAAATCACCCTT 308548 36 100.0 35 .................................... GGGCCTTCAACTTGTCGACCTCCTCCTGACGGGAC 308477 36 100.0 36 .................................... GCAGTTCGAGTTTCCGGCACGTGACAGGCAGTGTGA 308405 36 100.0 37 .................................... TCGAGCAGGTAGGGGCTGAGCTTGTCTCGGTGGTCTC 308332 36 100.0 37 .................................... CTATGGGGCGCTACTGGTGTCGGAAAAACCCGACATG 308259 36 100.0 36 .................................... CGGACATACAGGGGTTCAGGCGTCACCCAAGCCGCG 308187 36 100.0 35 .................................... ATTCAGGGCGTTGCCGCATTCGTCCGCGAAGTCGA 308116 36 100.0 36 .................................... ATAATAGTAGGGCCATACACCTTATTAGTGCATGAC 308044 36 100.0 37 .................................... CCGTTACAGGGCGTATGGGGTGGCGTGAACAGGAGTA 307971 36 100.0 37 .................................... AAGCCACATCAGCCGAGAACAATGCGTATCCTTCTTC 307898 36 100.0 38 .................................... CCGCCAGCAGCGTGCACTGTTACGAGGCTTCTACGGTC 307824 36 97.2 37 ................T................... GCGTTCCAACGGTCCATGCTGCCGTTGCCGTGCGGCG 307751 36 100.0 37 .................................... GTTACCGGAATTGTCAAGGCGATACTTGGGCAACGCA 307678 36 100.0 36 .................................... AACCAGTTCATCGACATCCTCGTAAATCGTATCGGC 307606 36 100.0 35 .................................... TACGGTCACCAGTACCAAGTCACAGGGTATGAGTG 307535 36 100.0 37 .................................... GTGGCTAGCGCTAACGGTAAGTGTGTTGTCGCGTATC 307462 36 100.0 35 .................................... TCATCGACCACGTAGTCAAGTCAAAGGACAACCGG 307391 36 100.0 36 .................................... TAAGCGACCAGGACGCGAGGACCGCTAGCGAACGGT 307319 36 100.0 35 .................................... AACAGTTGCACCATGCAACAATATCCAAACTTGAG 307248 36 100.0 37 .................................... TCGGTAATCCAGCAGCCGGATATGCCGACGAATCGGC 307175 36 100.0 35 .................................... GCGAGTGCGATGTGCATGTTCCCGTCGTTGTCGAG 307104 36 100.0 36 .................................... GGCGCGCGTCTGCACATGATTGTCGTCCCGCCCGGC 307032 36 100.0 35 .................................... CGCAACATCGGTCATACTTGGTTCTGTGTCCATCA 306961 36 100.0 37 .................................... CTCAATATCTGGACTCAGATATACGGCGCGCTGGGTA 306888 36 100.0 35 .................................... GACATGCCGTTGTATCGCATCCCGTTGGACGGTAT 306817 36 100.0 35 .................................... CATGAGATAGGCGTATTGCGATACAAAAAAGCCAA 306746 36 100.0 35 .................................... TTGGTGGGGGCTAGCTCGTCGTGGCATATGCTGAC 306675 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================= ================== 42 36 99.9 36 CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Left flank : GAAAATCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGGTGCGGATGTTTTTTTTGACGGTCAGGCGGCCAGTCCAAGGTGTTTGCGGTATTGCACGGGGCTTATCCAGTCCAGTGACTTCTTGATCCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGCGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCTTACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCTATGTTAGAGGACGTAGCCGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACTATAAATTCGAGCCTGC # Right flank : AGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCAAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAACAGGTAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTATCTGCCCTAATTAGAGTACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTTTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTATTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //