Array 1 191781-190286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAS010000003.1 Salmonella enterica subsp. enterica serovar Derby strain SH19MPS14 YZU2024_003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191780 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 191719 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 191657 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 191596 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 191535 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 191474 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 191413 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 191352 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 191291 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 191230 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 191169 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 191108 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 191047 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 190986 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 190925 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 190864 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 190803 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 190742 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 190681 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 190620 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 190559 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 190498 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 190437 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 190376 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 190315 29 93.1 0 A...........T................ | A [190288] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209181-208421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAS010000003.1 Salmonella enterica subsp. enterica serovar Derby strain SH19MPS14 YZU2024_003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209180 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 209119 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 209058 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 208997 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 208936 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 208875 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 208814 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 208753 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 208692 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 208631 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 208570 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 208509 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 208448 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //