Array 1 242006-243743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINSD010000002.1 Escherichia coli strain S555-1 NODE_2_length_362372_cov_61.229455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 242006 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 242067 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 242128 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 242189 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 242250 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 242311 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 242372 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 242433 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 242494 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 242555 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 242616 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 242677 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 242738 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 242799 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 242860 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 242921 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 242982 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 243043 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 243104 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 243166 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 243227 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 243288 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 243349 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 243410 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 243471 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 243532 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 243593 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 243654 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 243715 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269293-269748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINSD010000002.1 Escherichia coli strain S555-1 NODE_2_length_362372_cov_61.229455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269293 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 269354 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 269415 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 269476 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 269537 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 269598 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 269659 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 269720 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //