Array 1 422442-423934 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXPJ01000001.1 Salmonella enterica strain CFSAN064284 CFSAN064284_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422442 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422503 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422564 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422625 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 422686 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 422747 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422808 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422869 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422930 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422991 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423052 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423113 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423174 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423235 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423296 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423357 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423419 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423480 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423541 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423602 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423663 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423724 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423785 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423846 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 423907 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440067-441848 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXPJ01000001.1 Salmonella enterica strain CFSAN064284 CFSAN064284_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 440067 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440128 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 440189 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440250 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440311 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440373 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440434 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 440495 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 440556 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 440617 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 440678 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 440739 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 440800 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440861 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440922 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 440983 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 441044 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441105 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441167 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441270 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441331 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441392 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441453 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441514 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441575 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441636 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441697 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441758 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441819 29 96.6 0 A............................ | A [441845] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //