Array 1 52970-51861 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLX01000006.1 Photobacterium iliopiscarium strain NCIMB 13478 CFSAN065519_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52969 28 100.0 32 ............................ ACTTACGCGACATTTAAGACCGCAAGTGTTAA 52909 28 100.0 32 ............................ CCCATATTTTAAAAAGCCGAGGTCATGCCCTC 52849 28 100.0 32 ............................ ATTATTCACTGTTGCACCCGCAATAATTAGAG 52789 28 100.0 32 ............................ GTCGATGAAATCGAGGAACCGTTAGAATATGA 52729 28 100.0 32 ............................ GATAGCGAAAGCATGGGCGAATGCTGTTTATT 52669 28 100.0 32 ............................ AAGTTACTTGGTAAGCGTCACGATAATGTAAT 52609 28 100.0 32 ............................ ACTAAGTACGCACTATCACGTTGTGCAATAAG 52549 28 100.0 32 ............................ CAGTCGGCGTACTCAGCGTTAGCGATGTTGAC 52489 28 100.0 32 ............................ ATAGTTTAAACATCATTGTTGGTTTAGCTACG 52429 28 100.0 32 ............................ GTGAAGACAACGTACGCGAACACGTTGACCTT 52369 28 100.0 32 ............................ AACCAGCAATTTAACCGCGAGCTTTAACCCTT 52309 28 100.0 32 ............................ ACTGATTACGCGGTATAAGATGATTCGCTGAT 52249 28 100.0 32 ............................ TAAGATGTCTAATGCTTCTTTGGCTTCACCAC 52189 28 100.0 32 ............................ ACATGCTCACACCCACCGTAATAACGCTTATT 52129 28 100.0 32 ............................ AGCACTTTCAGCGCGGCACGTTGGATATCAAC 52069 28 96.4 32 .................T.......... ATATGAAGCCTGTGCTTAACGCTACGGGCTTT 52009 28 96.4 32 .......................C.... TGTTTGTTGGGTAATGAATGCTAACGGTACTG 51949 28 96.4 32 .........................C.. CATTCAATGCGATTGGCTTTGAGCTTGTAAAT 51889 28 71.4 0 ...A...A.G.T..T..T..A...T... | T [51864] ========== ====== ====== ====== ============================ ================================ ================== 19 28 97.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCATGTAACGACTATTACAGAAATTCCGAGTGACATCAAAGGTTATCAAACCGTTAAGCGTGTACAGACTAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCTATTCCTGATACAGCAGAGCGTAAGTTAACTTTGCCTTATGTTCAAATACAAAGCTTATCTAATCAGAATGTGATGCGGGTGTTTATTGAGCATAGCCAAGTTGTGAGTGCTGCAACTGACGGTGTATTTAGTAGCTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTAGTCATTTAACCCTTTTTTTTAGCCGTTATTAGTTGTATTTAAAATCAATGACTTATAATCAGCAGATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : CAGGAAGGGCATAACGATAACGATAAATTGAATGGAGGGGTGAAGCGGTTAGATTTACATCAAAAGGTTAACCATAAAGTCCACCATTCGCTGGACTTTATGTTGTTAGTTACATGCTGTTTACTGATTATTCTCATGTTCAAATTCGATCCACGCTTTTTCTAATTCAATGAGACTGGCTGTGATTTTAGCTTTGTCTTGTTTTTGAATGATTAATTGTCGAACGTGCTCTTGCTGTATAAAAATATCCTGACGTTTATTGTCTACAAAGTAGTTTCTTAATCCTTTTGCCTGATCCATATACTGATGTCCAATATAAAACGGTGTATATCAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATAGGCTGAATGGATAGTTTATGGGTTTATTTGCTTATGGCGTATCAAGTCTGAAACAGGTTATGCCATTATATAAAGAGGCGGGAATATAATAAATTTTAGGTAATATGACTAATTTACAGATTGAGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 61501-62609 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLX01000006.1 Photobacterium iliopiscarium strain NCIMB 13478 CFSAN065519_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61501 28 96.4 32 ...........T................ TTTCCATGATTTGACATAATGACGATCATTTC 61561 28 96.4 32 ...........T................ AAACCAAATAGCAGATGAATTTAAAACAAGTG 61621 28 96.4 32 ...........T................ TCTCATTTATGGCCAAGATGATTTAGAGCAAC 61681 28 96.4 32 ...........T................ GACAACGGGAACAAAAAAAGACTTGGCAGAGC 61741 28 96.4 32 ...........T................ CCTTGCGTATAAATCTGCGCAAGTACCGTTGT 61801 28 100.0 32 ............................ TAGAACGATATAATCATTAAAATATATATCCT 61861 28 100.0 32 ............................ TATTGATGAAACCTCTAACATTGATATTGCAA 61921 28 100.0 32 ............................ CAAATTACACGACCACCGTTCAGCGGGTAGCG 61981 28 100.0 33 ............................ TAGATATCTAGTGCCATCTGCAACCATTCCTAT 62042 28 100.0 32 ............................ AAATATGCGCGGGATGTCGTCAGCGGTCGGAT 62102 28 100.0 32 ............................ GAACATTCCAGTTACTTTACTTACAGCGTCAC 62162 28 100.0 33 ............................ GTGATGCTAATGGGTGGGGAAAGGTAGGAATAT 62223 28 100.0 32 ............................ ACCTTGAGGCAGCAATGCCACTTCTCGTAGTT 62283 28 100.0 32 ............................ TCTGTGACAGGAACAAATAAGTCGGTTTCACT 62343 28 100.0 32 ............................ AGCAATACAGGGAGTTAGTATTTATTATGCTA 62403 28 100.0 32 ............................ TTGAGGGTTTTAATCCATGAGTTAAGACGAGC 62463 28 100.0 32 ............................ GTAAAGCGGGAACACTTGCAGGAATAACAGCC 62523 28 100.0 32 ............................ CATAAGAAACAGTTGAGCAAGCAAGAAGATGA 62583 27 78.6 0 ...........T.T......-..TT..T | ========== ====== ====== ====== ============================ ================================= ================== 19 28 97.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTACTTCATTAGCTGAGAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCGGCCTGAGTAATGGACGTGCCAGTTCCGAGCATTATGGCTGTCGTGTTTGCTATGGGGATATTCCAATATAATGATTGCTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAACACGCGACAATGCTGCAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTGACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACAATAAAAAAACGAATTATATACATAATACGTATAATTCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGGCACTTATTCAAACCATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTCATTGAAATTTACTGTTTAGCTTTTATAAGCAATCACTTATACTAATTACGCTTCA # Right flank : TTACTTGCTGCTGCCATCGCTTCTTTGATTTCATCTGAGCTATAGCCCTTTGATGACAAATACGCATAGGCTTTACTTTTGTCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAGTTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATGACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTAATTTTAGCTTTGCTCAATAGCGTATCGGCGGCATCATGCTCAGAAATTGCTCTTGAAATATCTTGAAAGCTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAATTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //