Array 1 18855-17037 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAIJ01000029.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18854 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 18788 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 18722 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 18656 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 18590 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 18524 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 18458 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 18392 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 18326 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 18260 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 18194 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 18128 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 18062 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 17996 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 17930 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 17864 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 17798 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 17732 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 17666 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 17600 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 17534 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 17468 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 17402 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 17336 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 17270 36 100.0 30 .................................... AAGCCTTTTTTGAACTCGCTGTTCATGAGC 17204 36 100.0 30 .................................... CTTTTCCGGCAGAATAGGCGAGCGCGTCGC 17138 36 100.0 30 .................................... GGTTCGGTTTTCTGTAACGCCATATCGCCA 17072 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //