Array 1 5080-1795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFZA010000076.1 Catenulispora pinisilvae strain NH11 NODE_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 5079 29 100.0 32 ............................. ACCAGCCAGGTCACGAGCCCGATCACGTACGC 5018 29 96.6 32 ............................T CTCCGTCGCGGGGTATTCGTGAGGACTACATG 4957 29 100.0 32 ............................. CGCGCACGTCGACACCGCGGCGCTGGCCGCCG 4896 29 100.0 32 ............................. TTGGTCTGCGCTTCGAGCAGGTGGCCGCCGTT 4835 29 100.0 32 ............................. AGTGCTTGTAAAAGGTCGCCGAGGATCCAGCC 4774 29 100.0 32 ............................. GCCGGGTCTGCCTCGGTGTAGTCAGAGACGTA 4713 29 96.6 18 ............................G CGTTCCGGCCGTAGCCGC Deletion [4667] 4666 29 82.8 32 CC.A.G......................T GTTCTGCGCGCTCGACGTCGCCGCGACCAAGC 4605 29 100.0 32 ............................. CGCCGCAGGATGCTGTCCGAGGTGCTGGTGCC 4544 29 100.0 32 ............................. CAGGTCGGTTCGTCCATGACTGCCTCCCCCGA 4483 29 100.0 32 ............................. TGGAAGCAGCCGTAGCTGCTGTCGTCGCCGGG 4422 29 100.0 32 ............................. GGAGCCCGAACGCGGGGTGTGAATCAGAGCTC 4361 29 96.6 32 ............................T ACCCTGCTGATGTTCGACCGCTTTGCCGTGGT 4300 29 100.0 32 ............................. TATCACACAGTTTGTATGCAGTTCTACGGCTG 4239 29 100.0 32 ............................. GCGCAGATCCTCCTCGCCAAGGACGCCCTGCG 4178 29 96.6 32 ............................G ATGTCGGTGCTCATGGCGTTCCCCTTGGCTCC 4117 29 100.0 32 ............................. GGCGAGAGCTTCGTCAACGCCGCCGGAGTGCT 4056 29 100.0 32 ............................. GCGCACACGTACTCATCGCAGACCGAGTTCAA 3995 29 100.0 32 ............................. GAGTACAGCCGCGCTATGGGGATACCGTCGAC 3934 29 96.6 32 ............................T TCAACCGTCGCCTCCCCGGCGTCGGACGAGGA 3873 29 100.0 32 ............................. GTCGTGTTCACCGAGATCGGGTTTAAGTGGAA 3812 29 96.6 32 ............................T TCGGGCGCCCGATTTCGGCGTCGTCACGCTCG 3751 29 96.6 32 .................A........... CTCCCGCCGGTCCCGGCCGATCCGCGCCACCG 3690 29 100.0 32 ............................. CTGGCCGCCTTGTCCGAGGCAGCCTTCGTCAT 3629 29 100.0 32 ............................. CATCCCGAGGAGTGGACCGACGCAGTCGAGTT 3568 29 100.0 32 ............................. TTGACCAAGGCCTGGACGCCTGGAACGAGGCG 3507 29 96.6 32 ............................G GAGGCGCCGCGGGCGTCGAGGATCCGGAACCG 3446 29 100.0 32 ............................. TTCCACGGTCTCGCCGCCGCCTGCCTGGAGAA 3385 29 100.0 32 ............................. GGCAGTTCGAGCCGACCGCGAGCAGCTGGACT 3324 29 100.0 32 ............................. TCATGAGGGTTGATCCGTCTGGGCTCTTGGCG 3263 29 96.6 32 ............................A CCATGAGCCGGTGGTCTAAGCGCTTGGAAGCG 3202 29 100.0 36 ............................. ACCGGCGGTTTATACGGTGTGGCCGGAACACAGTCA 3137 29 96.6 32 .......................C..... CGGGCGAACAAGCTGGCCGAGGCGATTCGCGG G [3120] 3075 29 96.6 32 ............................A CTCTTTCGGCCGGACGCTAGTCGCAGGGACGG 3014 29 100.0 32 ............................. TTCCGAGACTTCAGGGTCTCGATCATCATGCC 2953 29 100.0 32 ............................. CCGCCCGCCGGTGTACTCATCCCACCCGGCCG 2892 29 96.6 32 ............................G CTGTACAGCGGCATAGCGAGCGTGGCAAAGAG 2831 29 100.0 32 ............................. TCGATCAGGTTTCCCAGCGCGCGCTGCCGCTT 2770 29 100.0 32 ............................. CACGCTTTCGTGATCATGGTGTCCGAGGCCGA 2709 29 93.1 32 ........G...................G CGGGCAAGGACCCAGAGTCCGGGCCGGCGGTC 2648 29 100.0 32 ............................. GACACAAGCGGTCTGGACCCGTGGAAGAAGCA 2587 29 93.1 32 ........G....A............... ATCTGTCCGAGCCGCTGGCGGTCGGGATCGCG 2526 29 96.6 32 ............................T CTGGTGATCGGCGCTGCGGCATTGCTGATCGC 2465 29 96.6 32 ..........T.................. CCGCCGCTGGTGAACAAGGCGGCGCTCTGATG 2404 29 96.6 32 ............................G TCCCGTATCCGCTGATCTGCGTTGCGGGCGTC 2343 29 96.6 32 ............................T TCAGTGGGGCGCGCGGGTCGTGGTCGGTCGGT 2282 28 96.6 32 .....................-....... GCGACGCGGTCACCGTCGCGGTCCTCGGTGGC 2222 29 96.6 32 ............................T CCCCAGGAGGTGTTCAGCGAGACGCCAGTGGC 2161 29 96.6 32 ...........A................. TCCCTATGGTTCTCAGCGCGAACATGGTACGG 2100 29 93.1 32 .......T....................T CGTTCATAGAAGCGGCGGAAGTCCAGGTGCTT 2039 28 86.2 32 ...........A.........-...T..T CTTAGAACGTCGGCCAAGGCGTAGTTGAAGCG 1979 29 82.8 32 .............AG...A..A......T TCAGCGCCCTGACTCCCTCACTTCCGCTGTAT 1918 29 82.8 32 .....A....T....A.....TC...... AGCCCGCCCGACTTTGGAGCGGGTCATATAGT 1857 29 82.8 7 .......T...A.....A.C........G GCGTCAG Deletion [1822] 1821 27 89.7 0 ........T-...........-....... | ========== ====== ====== ====== ============================= ==================================== ================== 55 29 96.8 31 GTCGGCCCCGCGCGAGCGGGGGTAGCTCC # Left flank : CACCTCTATATCCAGTTCACCGATTGGACCCGGGCCGAGGAGGTGTTCATCGAACACGTCCTGCCCACGCTGCTGCGGCTTCAGGCCATGGAGCGAATCCGGTCCTGGTGGTTCTTGCGCAATCACCCCTGCTGGCGACTTCGACTTCTCACTCCACCTGGCACCAGCCTGCCCCAAGAACTGGTCGGCGTGCTGAATGAAGCAACCCAGCACCACCACCTGACCAACTGGCGAACCGGAATCTACGAACCCGAGACCGCTGCCTTCGGCGGCCCAGACACCATGAACACCGTCCACGAGTTGTTCGCCGCCGACAGCATCGCAACGCTGACAATCAAGCCCAACTTCAAACACTTCGAGCCGCGCGAACTCAGCATCCTACTGATCACTACCATGGCCCAAGCCGCAGGACCGGAATGGTACGAGCAAGGCGACCTGTGGCTGAGGAGAGACCGACTCCAAAACGACTCTTCTCACAGTAGAGTCGCTGCTCAGGAAGG # Right flank : GGGTCGACCACAGCGGAGTTCCGTTCGCGGCGACGACCGCGTTTATGAGCGGGAGTTCCCCCGCCTCCATCACGGTATACCGACAGTCCAAGTCAAACCGGTATGAGAGGAGTAGTCCGGTCACACATGCGGTACGAAGCCAGTAGGTCCGATGTGCGCGGGATACGACGTCGAGACGCCGCCACCTGTGCGTCAATGGATCTACGGGTCTTCGGAAAACCACTGGTAGCGGTCTAGCGAGCGCAGTGTGGTTAGCCTTTCCGCCGCTACTCGCGCCCCTTCCGTCGCTCCCGGGCCGAAAGAATCAGTCCGTCGAAGTCGACCGGATACCACCGGTCCCGGCCGGCGCTTCGCATTGCCCAGCCTTGTTCATTTCTGGCTGGCTCGATCATCAGCGCTTGGCCGTCCGCGATTCGATCTTCCAGGGTTCCCCACAGGAAGTCACGCAGCCGGCGGTTTGGCGACCCGACAAACACACCTGCCGAAGCTTCCACCATCCA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGAGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //