Array 1 903122-904938 **** Predicted by CRISPRDetect 2.4 *** >NC_023030.2 Mycoplasma gallisepticum S6, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 903122 36 100.0 30 .................................... TTTGGGATCTTATTTTCTCACCTCACCCGT 903188 36 100.0 30 .................................... TTAAAACTAACTAAGTTTGTTTCTCCGTTG 903254 36 100.0 30 .................................... GACTCAAAAACGTCTTTGTTCGTCGTTTAA 903320 36 100.0 30 .................................... TAGCATAAATTTGATTAACAAATTGTGTAT 903386 36 100.0 30 .................................... TGGGAGGATTTACATCTTTTAATCCTAACA 903452 36 100.0 30 .................................... GTTTGGTGTAGCTGTTTATGTCGTAAAGGT 903518 36 100.0 30 .................................... GTCTCAAAAACAATATCAATCAGGTTCACT 903584 36 100.0 30 .................................... TAGGGGTGGAGATTTGTGATATCGGCTGTG 903650 36 100.0 31 .................................... CTCGGCCCATTCATTCCCACGGCCGATATCA 903717 36 100.0 29 .................................... CAAATAAGCGCTTATATCTATTAAATTTA 903782 36 100.0 30 .................................... TTAAAAAAGAAGTTTATAAAACTTTGATTA 903848 36 100.0 30 .................................... TTTTGGGTATGATTTACAAACCCCAATTTA 903914 36 100.0 30 .................................... TCAATATTTACTTTAAGTCCAATTAGCTCA 903980 36 100.0 30 .................................... TCAATATTTACTTTAAGTCCAATTAGCTCA 904046 36 100.0 30 .................................... CATTTAACATATTTTGTATATCTGCAAAAT 904112 36 100.0 30 .................................... ACTAATTTAAATTTGTCAATAGTTTTTGTA 904178 36 100.0 30 .................................... ATAAATTTATTGAATTTGATAATCTCGTCT 904244 36 100.0 30 .................................... AAATTGAACACTTTAACGAAGGTCAGTTAG 904310 36 100.0 30 .................................... TTAATTTAATAGGTGTTAAGGGTTATGAAG 904376 36 100.0 30 .................................... AACTTGAAAACGACTTCGTGTTTGGTCTAT 904442 36 100.0 30 .................................... TTAAACAGATCGATAAATTTGCAGCTGAAA 904508 36 100.0 30 .................................... TTAAAACGAAACGATCGCTCTTGCCCTTTT 904574 36 100.0 30 .................................... TCCAAATCAGCTGGTTTAACATAGCCCATT 904640 36 100.0 30 .................................... GCGCGATCACAAGATGCATGATACTTTTGA 904706 36 100.0 29 .................................... AAAAACCAGAGATAACCGATGGGTTAAAT 904771 36 100.0 30 .................................... CTTATATTCATCATCTTGTTTAGTTTCATA 904837 36 100.0 30 .................................... ATAAATGCGAATAATGTCCTTGTCGAAGAT 904903 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGTTAAACTTAATGAAACGTTAGGTCGTGATATTATCTCGTTAGATACTTCTTACTCTAAGATTCTGAAATCAATAATAAAGATTTCAGAAGACTATATAGATCGTGAATTTATCTATTCATATTTAGAGTTATTACATTGATCAAAAGAAGTTAAAACAGTTATTCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTAAGTAACTTAACTCAAACTACTAATTTAATTATTATGAAGAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGTTTAATTGATAATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATCAAGAGTTTAAGGCCAATATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAGTTAAAAAAGCACACTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTCTATAAACAAAAAATTTTATCATTAAGCATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCCTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAAGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGATAATCAGCATTCTTAATTAGTTGACTGGAAACTCCTTTTTGTTCGTTTCCAACAATTAGGATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTTTCTTGTAAATCTTTGATCGCATAAGATAAGTTAGCAACCTCAATTAAATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACGGTATTGTTAATACTTACTTGGTTATCTTTTTTAAAGATGACCCCAAGTACATTTGCCGCCAAACAAGTCCGTAAGATCCCACCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //