Array 1 171948-172830 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOC01000008.1 Salmonella bongori serovar 48:z35:- strain BCW_1557 NODE_8_length_289713_cov_0.457392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 171948 29 100.0 32 ............................. AGAACAGTATATTGTCGCCGAGCGTTACACGT 172009 29 96.6 32 ............................T GACGCGCCAGCTCCACGCACATGCCGCGAGTC 172070 29 100.0 32 ............................. CCATATTTAGACTTGTTCCCTATCGTTGCTGG 172131 29 100.0 32 ............................. CCGCAGTTGCCGTTAACACTCAGATTATTAAT 172192 29 100.0 32 ............................. TCAGTACAGAATGATTCCCCTGTTATTGGTGG 172253 29 100.0 32 ............................. ATTTTTTGATTTACTATCAGCGTATAATTGGG 172314 29 100.0 32 ............................. ACGACTCAGGATCTCCAGTGTTACGTAGAGCG 172375 29 100.0 32 ............................. CGCCTAAACTCAGGGCGATCCAAATTTTTCCC 172436 29 100.0 32 ............................. TCCGCCTGTACATTCTGCTAAGAAGTGAAATT 172497 29 96.6 32 .................A........... GCGTTGGCGGAGACGGACTTGCAGCCCGGCAG 172558 29 96.6 32 ............................A CTTGAGCATGAACACATCATGCAGGTGACACA 172619 29 100.0 32 ............................. CAGATATTACTGCTCTCCGTCAACTGGTAAAC 172680 29 100.0 32 ............................. GAACGTGGAATCAAACACGCACTGGTTAATAC 172741 29 100.0 32 ............................. GCGGTTTTTTTATCAGTCAGGGTGAGGGAATA 172802 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATTAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAATTCGAGGAATGTATAAAGTAGTTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188823-189463 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOC01000008.1 Salmonella bongori serovar 48:z35:- strain BCW_1557 NODE_8_length_289713_cov_0.457392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188823 29 100.0 32 ............................. ACGAGTTTCCGCAGTCCGGCAACTATGAAACC 188884 29 96.6 33 ............................A AGAGACCGATGCACTCGGCCAGCCGTTGCTGGA 188946 29 96.6 32 ............................T GGCGCTGAATGCGGTTCTGCATTAATTCATCA 189007 29 100.0 32 ............................. CAAAACTGGAAATGTTCACGTCGTCCCCCTTT 189068 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 189129 29 100.0 32 ............................. CACACAATATATAATTGTGCTCCACATGGTCA 189190 29 100.0 32 ............................. ACGAGTTTAAAAATAATGGACGCTAAAAATCA 189251 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 189312 29 100.0 32 ............................. GTCAGAATGACGAATTTCCCTGAATTATCAGA 189373 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 189434 29 86.2 0 .....................C.TT..T. | T [189459] ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACATGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //