Array 1 111559-108909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBEP010000007.1 Klebsiella pneumoniae strain KP-P2 NODE_7_length_181902_cov_27.866558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111558 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 111497 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 111436 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 111375 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 111313 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 111252 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 111191 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 111130 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 111069 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 111008 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 110947 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 110886 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 110825 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 110764 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 110703 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 110642 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 110581 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 110520 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 110459 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 110398 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 110337 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 110276 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 110215 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 110154 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 110093 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 110032 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 109971 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 109910 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 109849 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 109788 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 109727 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 109666 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 109605 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 109544 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 109483 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 109422 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 109361 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 109300 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 109239 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 109178 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 109117 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 109056 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 108995 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 108937 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3020-4022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBEP010000078.1 Klebsiella pneumoniae strain KP-P2 NODE_78_length_4398_cov_50.299793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3020 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 3081 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 3142 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 3203 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 3264 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 3325 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 3386 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 3447 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 3508 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 3569 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 3630 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 3691 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 3752 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 3812 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 3873 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 3934 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 3995 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATGGGTCTTCCCCGATCATGGTGGGAAGACTCAGAACGCCATATTCAGTT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //