Array 1 981006-982498 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050726.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST113 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 981006 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 981067 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 981128 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 981189 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 981250 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 981311 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 981372 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 981433 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 981494 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 981555 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 981616 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 981677 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 981738 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 981799 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 981860 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 981921 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 981983 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 982044 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 982105 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 982166 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 982227 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 982288 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 982349 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 982410 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 982471 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 998630-1000594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050726.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST113 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 998630 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 998691 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 998752 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 998813 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 998874 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 998935 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 998996 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 999058 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 999119 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 999180 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 999241 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 999302 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 999363 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 999424 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 999485 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999546 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999607 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 999668 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 999729 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 999790 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 999851 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 999913 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1000016 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1000077 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1000138 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1000199 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1000260 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1000321 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1000382 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1000443 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1000504 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1000565 29 96.6 0 A............................ | A [1000591] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //