Array 1 3979-5131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQU010000002.1 Streptococcus salivarius strain D55t1_190419_H11 NODE_2_length_197497_cov_22.7386, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3979 36 100.0 30 .................................... TCTTGTTCAATTATTTAACTATTGTGGGCG 4045 36 100.0 30 .................................... TTGATATTTTAATGACTACTGTAGGGGGAG 4111 36 100.0 30 .................................... GGGTTGTCATTTTCATATGGAGTGGATCAG 4177 36 100.0 29 .................................... GACTTCTGGTGTTACAGCACCTACCACAC 4242 36 100.0 30 .................................... ACCGTCCGTATTGTTAATAGCCTTATTATA 4308 36 100.0 29 .................................... GTTGTCTGGTTGGATTGCTAAGAAAGTCG 4373 36 100.0 29 .................................... CTCGTACATTAAACGTTTTATCTGCCATC 4438 36 100.0 30 .................................... AAAACCTTAAGTCACAGTTTGCAAAATACA 4504 36 100.0 29 .................................... CAAGCAGCGACACCCTCGGAAGACCAAGG 4569 36 100.0 30 .................................... CGCTAGGGTCACAGGTAATGCTAAGGTCTA 4635 36 100.0 30 .................................... AGACTAAGCGACTTGTCAAAGGTGCTAAAT 4701 36 100.0 29 .................................... TTCATGGACAGCTACAAGGATGTCAATTT 4766 36 100.0 30 .................................... CGGTTTTACAAGTAATCGTGCAAGGTATCC 4832 36 100.0 30 .................................... ACTGGTCTATTCGTTTTAAAAACCGTGCAT 4898 36 100.0 30 .................................... CCACTAATGCGGACGGCAGAAAGAACGGTG 4964 36 100.0 30 .................................... CTGAGTTGTTACCGATAGAACCGACGCCCT 5030 36 100.0 30 .................................... CTATAATAAAAAAAGCCTAACTTTCAGCCT 5096 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTGTCTCAGAGGAATCTTATGATAGTTTTTATAAGAAAATTGGTCAGCTAGCCCAAAAGTATCCAAACCTAAACTTTATTTTGTTTCCTAGTGACCAAGGATATCTAAAGATTGACGAGGAAAGTAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCGACGCGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTCGTTGATTCAGTAATTTTGAATATCTTAAATCAGTTGTTTCACTTTAACTATTGTATAAGATATTCTCAGACACCTGATGAGGAGCTATTACATAGATATTTAAAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAAGGGTTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTGAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAGACAAAACCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTATATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTAGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //