Array 1 66311-72941 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHOU01000006.1 Salinicola salarius strain 1A01339 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================================================== ================== 66311 33 100.0 34 ................................. TTGCCGGGCAGGGTGAGACTGCCGCCATTGCGGC 66378 33 100.0 34 ................................. AGCTCGTGGCGCATGGCGGCAGCGAGGTAGCGCC 66445 33 100.0 35 ................................. CTCAGACCGAATACAAGCAAACCGTCAACCACATC 66513 33 100.0 34 ................................. GTGACCTTGACACCCCGCCGGCCCAATCGCACTA 66580 33 100.0 35 ................................. CAGCCGCCCAGCAACCAATATTTCACGATCAGCAC 66648 33 100.0 34 ................................. CCGACGAAGGTGCTTGTACGGACATTGTGGAGTT 66715 33 100.0 35 ................................. AGACTGCACCCGCGACACCACGCGCCCTAACGCCT 66783 33 100.0 34 ................................. CCCTAAGACAGCGGCTGTGCAAGCAAACAGGCTG 66850 33 100.0 34 ................................. TAATGGTATTTTGGGATATGTCAAACCTACTCGA 66917 33 100.0 34 ................................. TGGTGCCCGTGGTTCAGGATACGGCGGATAAGGT 66984 33 100.0 37 ................................. ATCCGCTGGGAACTCAGCATCGAGGAGAACGATTCAT 67054 33 100.0 34 ................................. TGGCGGCAGTCGAAGTAGGCCTGGAAGATCTCGT 67121 33 100.0 35 ................................. TGGCGCGAGTGTGCGGCGCCTGCCGATGGCCAGTC 67189 33 100.0 35 ................................. AACGCGCACCACGACGATCATCGCACCCGTCTGGT 67257 33 100.0 34 ................................. GACAACCTGACCCAGCAGATCGATCGGCTGGAAA 67324 33 100.0 36 ................................. CTCGAGGAAAGCGCCTACCGCGAGCTGCTGCTGCGT 67393 33 100.0 35 ................................. AAGAACCAGATGGAGCATACAAGCCCTGATGGATC 67461 33 100.0 34 ................................. AATAAGTTGGCAGCGACTGGTTCAGGCATGGCAG 67528 33 100.0 34 ................................. ATCACGCGCATGGCGGATGAAGCTGTTGAACAGA 67595 33 100.0 37 ................................. CTGATAGATACCATTGACCCACTGTCCCGGCTGGACA 67665 33 100.0 33 ................................. GGGCGCACTGGCGCGGTGACGGAGCAAGTCCTC 67731 33 100.0 35 ................................. CGGGGCGACCTCGAACAGACGCTCGAACTCTTCGT 67799 33 100.0 34 ................................. AACCCGGCCAACCACGGCACGAAAAAGAGCCTGA 67866 33 100.0 36 ................................. AACAATGGCAACGAGAACAACAACACCAAGACGAAC 67935 33 100.0 35 ................................. ACCTTCGACGTTTTTGTCCTGGTACTGCCACTCAT 68003 33 100.0 35 ................................. ATTCGAGCCCCGCGAGACAGAGTTCGCGCTCGGTC 68071 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 68139 33 100.0 35 ................................. ACGCTCTCCGCTCCGGAGGCGATGGCCGTCTGGTA 68207 33 100.0 35 ................................. GCGGCGGAATGAAGCCAGCCGCAAGGCGGCAACGA 68275 33 100.0 35 ................................. GTGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 68343 33 100.0 35 ................................. TCAAGGACATCGAGCGCAAACCCACTGGTGGCGAC 68411 33 100.0 35 ................................. ACGCTCTCCGCTCCGGAGGCGATGGCCGTCTGGTA 68479 33 100.0 35 ................................. GCGGCGGAATGAAGCCAGCCGCAAGGCGGCAACGA 68547 33 100.0 33 ................................. GGGCGCACTGGCGCGGTGACGGAGCAAGTCCTA 68613 33 100.0 35 ................................. GCGGCGGAATGAAGCCAGCCGCAAGGCGGCAACGA 68681 33 100.0 36 ................................. GTTGGCCATCTGGGTGCGGCTATCGATGGTCTGGGT 68750 33 100.0 35 ................................. TCGTGCTCGAAGCGGGTCGCCGAATCCATGGCCAG 68818 33 100.0 35 ................................. TCCGACGTGCGCTGACGGCCTGTCATGCCGGCCCG 68886 33 100.0 35 ................................. TCAAGGACATCGAGCGCAAACCCACTGGTGGCGAC 68954 33 100.0 35 ................................. GTGCTCAGAGTGATCGGTGAATCTATGTCGCCAGA 69022 33 100.0 70 ................................. CTCAGACCGAATACAAGCAAACCGTCAACCACATCNTATCGGTGACCTGGAGGGCGCGCTCGCGATCGGG 69125 33 100.0 36 ................................. CTCGCTTATCCCAGCGAGGGATCCGGCTCAGTGAAG 69194 33 100.0 36 ................................. CCAGCTGTCGCAGTCACCCTGCTGCTCTTTCCAGAA 69263 33 100.0 33 ................................. TTCATGACTTGCCTCTATCCATCCAGGCTCGGA 69329 33 100.0 36 ................................. GATATCGGTGACCTGGAGGGCGCGCTCGCGATCGGG 69398 33 100.0 35 ................................. TTCACGCTGCTGGCCATGCCGGTGATGCTGTCCTT 69466 33 100.0 33 ................................. TTCATGACTTGCCTCTATCCATCCAGGCTCGGA 69532 33 100.0 32 ................................. TCCAGCATGTAAGTGGCGGCTAGATCGCGGCA 69597 33 100.0 35 ................................. TTCACGCTGCTGGCCATGCCGGTGATGCTGTCCTT 69665 33 100.0 34 ................................. GCCGAGGATCTCGACACCGTCATGGTGCCATTGC 69732 33 100.0 34 ................................. AGCTTCGGTGACCCGGTCCCGGTGACCGACGGCT 69799 33 100.0 32 ................................. TCCAGCATGTAAGTGGCGGCTAGATCGCGGCA 69864 33 100.0 34 ................................. TGACGTCGCCCCAGATTGGGAATGGTTCGAATGC 69931 33 100.0 33 ................................. TGACGCGGATGCCGACGGCTACGCTCCTGCGAA 69997 33 100.0 34 ................................. AGCTTCGGTGACCCGGTCCCGGTGACCGACGGCT 70064 33 100.0 37 ................................. ACCGGATGCCGCGGCGCCGCCGTACACCGCGCCCGTC 70134 33 100.0 35 ................................. AGATAGATCAGCGCGAAGATCTGCGAGAGCAGGTT 70202 33 100.0 33 ................................. TCTAGCGAATGCTTGCCGCCTTTCATGCGCCTC 70268 33 100.0 34 ................................. ATCGACCAGCGTGGCCGGGTTGAAGGCGACGATG 70335 33 100.0 37 ................................. GGTANGAGGACGCCCCTATGGCCTACCTGGTCGTGAC 70405 33 100.0 34 ................................. ATCGACCAGCGTGGCCGGGTTGAAGGCGACGATG 70472 33 100.0 36 ................................. GGTAATCTGCGCCATTGATGACCTTTGGCGGGAGCT 70541 33 100.0 34 ................................. TCGGCGGCGGCGCTGCGGTTGGTGCGAGCCCGCG 70608 33 100.0 36 ................................. ATTGATGGCGTCCACGAGTCCGTTATGCCGAGTGGC 70677 33 100.0 34 ................................. TTCGCCCGATAGAGCATCTCGAGCTGGTCGCGGC 70744 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 70812 33 100.0 35 ................................. TCCTTTGCCGGCGTTCCCACGCCTGATAGTCGGAC 70880 33 100.0 36 ................................. ACCGCAGCCGCAACCGGCGGCGCGGCGCTGTACGGC 70949 33 100.0 35 ................................. AGCGGAACGTGAATTCACGCAGGTATCGTGCGGCG 71017 33 100.0 35 ................................. TAAGAGGACGCCCCTATGGCCTACCTGGTCGTGAC 71085 33 100.0 33 ................................. TCCCGGATGGATTGGCACTCGGTGCAGGTGGTG 71151 33 100.0 36 ................................. ATTGATGGCGTCCACGAGTCCGTTATGCCGAGTGGC 71220 33 100.0 34 ................................. TTCGCCCGATAGAGCATCTCGAGCTGGTCGCGGC 71287 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 71355 33 100.0 35 ................................. TCCTTTGCCGGCGTTCCCACGCCTGATAGTCGGAC 71423 33 100.0 36 ................................. ACCGCAGCCGCAACCGGCGGCGCGGCGCTGTAGGGC 71492 33 100.0 36 ................................. ACAGTCGTTCCGCCGCCCAGGCGGAAGCTGCCGCTC 71561 33 100.0 34 ................................. AATGCAGCATCGCCTGTCGCGCCGGCATGACGTG 71628 33 90.9 27 .............................NNN. AGGCTGGCCTCAAGACCAACGAAATAC Deletion [71688] 71688 33 100.0 34 ................................. ACCGTCTCCGCCACCCTGATCCTGCGCGAGGGCC 71755 33 100.0 35 ................................. AGGGACTCCTGGGTGTTGAGCTCCTCGTTCAGCCA 71823 33 100.0 35 ................................. CGTATCCGCCGGCTGCTGTCTGCGGCGCTGGCGAT 71891 33 100.0 33 ................................. AACGCCGTGGTGCTGACCTCGCTGCCCCTGGAC 71957 33 100.0 35 ................................. ATTCGAGCCCCGCGAGACAGAGTTCGCGCTCGGGC 72025 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72093 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72161 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72229 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72297 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72365 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72433 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72501 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72569 33 100.0 35 ................................. ACGGTCTGACCCATGACCAGCTCGAGCCAGGCGGC 72637 33 100.0 35 ................................. TCCTTTGCCGGCGTTCCCACGCCTGATCGTCGGAC 72705 33 100.0 34 ................................. ACACGCGTCACGATGTGGGCATGTTTGGTCGTGC 72772 33 100.0 36 ................................. TGGCACTCGACCAGCAGCGCATACACGTCGTAAGCC 72841 33 100.0 35 ................................. CACAGGTCGTCGACGGCCACGACCCCGTATGGCAG 72909 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================================================== ================== 98 33 99.9 35 GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Left flank : GAAATAGATCGGGAGTTCTTCATGCTGGTACTGGTCAGCTACGATGTCAGCGTTACCTCTGAGGGCGGCCCACGCCGGCTAAGACGAGTGGCGAAAGCCTGCCGTGATTTCGGGCAGCGTGTACAGTTCTCCGTCTTTGAAATCGAAGTCGAACCGGACCAGTGGGCTCGACTGCGACAGAGCCTGATCGACTTGATCGATGAAGAGGTCGATAGTCTGCGTTTCTATTTTCTCGGACGTAACTGGCAGAAGCGTATCGAACATGTTGGCGCCAAGCCGGCGCTGGATATGAATGGTCCCCTCGTGTTCTGAAAGATTTTTCCTCTGCGAACCTCAAGTGTCCCTCTCTTTCCCGCCAGGTTCGCAGCTCTTTAACAAGTTGATTCAAGAGCAATCGAACGCTTTACGTGGTTAACGGCGCTCCATAGGCTGCATATCAAGTAAGGGTTCGCTGATGTACAGCGATTTTGTTTTATCGTTCAATGAGTTATAAACGAGCA # Right flank : CTCACCGAAGTGCGTCGCGTATCCGTCGCTGTAGAAGGTCGCGGCCCGCACGGGTCGCGCGGATANAAGGGCTGCAACGACGGTGCCCTGGGCGACAACGTCGCGGCCCGCACGGGTCGCGCGGATAGAAACACCGTCTCGCCCGGCACGGAGTCGGATACCCACGTCGTCGCGGCCCGCACGGGTCGCGCGGATAGAAACGAAGCCGAGATCCTCAGCAACCACTCGGTGGACGTGTCGCGGCCCGCACGGGTCGCGCGGATAGAAACGCCCACCGCCGACATCGGCGGCGATACCAGCGAGGGTCGCGGCCCGCACGGGTCGCGCGGATAGAAACCTCGCTCAGGCTGGCCTCAAGACCAACGAAATACGTCGCGGCCCGCACGGGTCGCGCGGATAGAAACCGTATCCGCCGGCTGCTGTCTGCGGCGCTGGCGAGGTCGCGGCCCGCACGGGTCGCGCGGATAGAAACGAACAGGGTTCGCGGCTGCGCAATCGCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 889-82 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHOU01000117.1 Salinicola salarius strain 1A01339 scaffold118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 888 27 96.4 32 -........................... ACCTGATCGAGAAGCCCGAGCGCAAGCGCATC 829 28 100.0 32 ............................ ACCACTTCGTCGACGTCGTCACGCTCGTAGCT 769 28 100.0 32 ............................ AACGCTGGCGCCATCCGCTCACTCGATCAGCG 709 28 100.0 32 ............................ GCTTCAACGCAGACGACGAGGGATTCCGAGCG 649 28 100.0 32 ............................ TGGGAGGATGGCCTCGGCGGCCTGCTTCTCAG 589 28 100.0 32 ............................ ATAATCTCTCCGCATGTGTGGCTTTGGGATAT 529 28 100.0 32 ............................ AAGTTGGCATCAGCGACGCCGCCAAAAGTTAC 469 28 100.0 32 ............................ ATGCAATATGAGGAAAAGCGCAAAAATGCCAG 409 28 100.0 32 ............................ GGCTGGTTCGGTGGGCTGTGGGATGGCATTAC 349 28 100.0 32 ............................ GACTTCTGGCAGCAGACCTCCTCGACGTTGGG 289 28 100.0 32 ............................ TTGCCTCCCTTCGGCTGCGGCACAGCGCGCAG 229 28 100.0 32 ............................ ACATGAACCGGCTGATCCGCAGGGCGCTGATC 169 28 100.0 32 ............................ TTGCGTGCAGCGGCGACGGTAAGGCCTTCGCC 109 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : | # Right flank : AGGCAAGCCCAGACTCGTATTCCAGATCTGAAAGTTCGCTGCCTGTAGTGGTTGTAGTGGTCAAGTGCTTTTGGCCACCGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5728-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHOU01000005.1 Salinicola salarius strain 1A01339 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5727 28 100.0 32 ............................ CACGAACACCTGGTCGCCAGCGAGTACGGCGA 5667 28 100.0 32 ............................ TGGCGAAGTGACGTCTTCTCGGGGATCTGGCC 5607 28 100.0 32 ............................ AGCGAAAACGCTTTCATGTCGCCCGGGTGCTG 5547 28 100.0 32 ............................ ATCCTCCCTATCTGGTATCTCGTAATCCCCGG 5487 28 100.0 32 ............................ ATGATGTCGCGGCTGATGGAGCGCTACACCAC 5427 28 100.0 32 ............................ GCGCTGAACCTCGACCAGTACGAAGCTCAGTT 5367 28 100.0 32 ............................ CGTGGTTGTCGGCGGCGCTGCGCTTGCGCGCC 5307 28 100.0 32 ............................ AATGCCTGAAATGTGCACCGACAGAGAGCATC 5247 28 100.0 32 ............................ ATCAGGGAAAGACGGTAGATGAAGCTATAGCG 5187 28 100.0 32 ............................ ACTCGCCTCGGCATGCAGGTCGACGCTGGGCG 5127 28 100.0 32 ............................ TTGTACCGGCGGGGCGTGATGTACTGCATCCG 5067 28 100.0 32 ............................ ATCACGAGATCGGAAAATGCGACATCACCGTT 5007 28 100.0 31 ............................ TACGCGACGGCAAGATTCCGGGCGTGAAGCT 4948 28 100.0 32 ............................ GAGCAGGTAGCTCAGGATATAGCGCACTCTAG 4888 28 100.0 32 ............................ AACCCCCTCATTTCTCGTCCGTGAACTGGTCT 4828 28 100.0 32 ............................ GTCAGACGATGGTGATACGGCACGCGCATCAC 4768 28 100.0 32 ............................ GTGCGCGAAGTCCTGATTACCGGGCGCCGTCC 4708 28 100.0 32 ............................ TCGATCAACTGTCTTGCCAGCGGATGCGCCAT 4648 28 100.0 32 ............................ TGAACCCTGGCGTCCCTCAACGCCGGGGTTTC 4588 28 100.0 32 ............................ GTGACCGAGCAGCTCGCCGTCGTGCTGGTCGC 4528 28 100.0 32 ............................ GGAACGTTCGCCTTTGCTAAGACCAGCGGCAT 4468 28 100.0 33 ............................ AGGAAAATGGGATTAACAGGCAGACGCTAAAAT 4407 28 100.0 32 ............................ TACTGGGTAGGCGAGGGCGTCGATGCGACGGA 4347 28 100.0 32 ............................ ACCACGCCCACCTGGTCGTCCCAGTCGTGCTT 4287 28 100.0 32 ............................ ACCCCGCACCTGTGACAAATCATCGTCATTGC 4227 28 100.0 32 ............................ AGACCACCAAAAACACCGGACAGACAGCCAAA 4167 28 100.0 32 ............................ ATCGGCTGATAGACGGCGTTGGGCAACGGCTC 4107 28 100.0 32 ............................ TGGTACTGGTAGTTGCCGTAGTTGTCGCTGGC 4047 28 100.0 32 ............................ TGGTCGACGCGACGATAGTCGTCGACGTGCTC 3987 28 100.0 32 ............................ TTGAGCTCGCGCTTGATGAAGTGATCCAGCGT 3927 28 100.0 32 ............................ ATGGTGCGCGAGCAATCGATCACCCGGGCCAC 3867 28 100.0 32 ............................ AAGCTGCCAAAGTGTAGCCGGGCCGGTAGTCG 3807 28 100.0 32 ............................ AGTCGATGCACTCGGCGGCGGTGCGCCAGGCC 3747 28 100.0 32 ............................ GAAATCCCGATCAGGTGTCTCGGCGTAGTTCA 3687 28 100.0 32 ............................ AAGCTGCCAAAGTGTAGCCGGGCCGGTAGTCT 3627 28 100.0 32 ............................ ATTCAGTGTCGATGAAGTTTTCATTCTCGCCA 3567 28 100.0 32 ............................ AGTCGATGCACTCGGCGGCGGTGCGCCAGGCC 3507 28 100.0 32 ............................ GAAATCCCGATCAGGTGTCTCGGCGTAGTTCA 3447 28 100.0 32 ............................ AGCGTTGGCCGGAGGCTGCCGACTACGCACTC 3387 28 100.0 32 ............................ GAAAGCGCTCTCGCGGCCCCGGCCGAGGTCGC 3327 28 100.0 32 ............................ ACGAGGATGGCATCGGACTTCCGGTGGGTGCG 3267 28 100.0 32 ............................ ACGGCGGCGCTGGACTCGTTGACGCGCCCCTC 3207 28 100.0 32 ............................ TGGAAACGCGCGATCGACCCGCCGTTGTGGCG 3147 28 100.0 32 ............................ AAGCTCGGCGAGGTAGTCCGCCTTGGGACTTC 3087 28 100.0 32 ............................ TGATCAACCTGCACAACCACCTGGTGTGGCAG 3027 28 100.0 32 ............................ GCACCATAGCCAGCTGCTGTCGTTCCGCCGAT 2967 28 100.0 32 ............................ CCCAGCCCGCCCATCGATCCGACACCCGACGC 2907 28 100.0 32 ............................ TACATACCCGGCCCCGCCGGGCATAGCCCGTT 2847 28 100.0 32 ............................ AGCAGCTGCTCGCGCGCCGCTTCGGCGGTCAC 2787 28 100.0 32 ............................ ATGCCAGCGCTGGCCGATCATGCCGGAGCTGT 2727 28 100.0 32 ............................ TACATGGCGGCCGACCCGAACCTGTTCGACAC 2667 28 100.0 32 ............................ GCTGACTTCCTCGAGCGGATGTTCGCTCAGTT 2607 28 100.0 32 ............................ CTCATGCGCTGGGAACCGCGGATCCGCGTCAA 2547 28 100.0 32 ............................ AAGAGATGGAAGACGTCGACCTTGAGCACCGA 2487 28 100.0 32 ............................ ACGTTGGCCGTGCTGGCATCGATATCGATCCA 2427 28 100.0 32 ............................ ACCACACGGATGCCATAGATGGCGCGGTCATC 2367 28 100.0 32 ............................ GCAGCGCATCACTGACGTGCTGCTGACCGCGA 2307 28 100.0 32 ............................ TGCCGGCGCTGGCTCGGACCTATCGGGCGACG 2247 28 100.0 32 ............................ TGATCGCCAACGCTGCGTTCTACCCCGAGATC 2187 28 100.0 32 ............................ CGACATCAATCAAGAGATCTACGGCGTGCCTG 2127 28 100.0 32 ............................ TCGCCCATGAACACGTCGCCGGCGACGATCAA 2067 28 100.0 32 ............................ TGTCTGCGCACCCCGACGTCAAGGACGTCAAT 2007 28 100.0 32 ............................ TCGATCGTCACGATCTGGCGCCACTGGCCATC 1947 28 100.0 32 ............................ TTTTCCTCGACCGCCAGTTTCATGAGCCGCTG 1887 28 100.0 32 ............................ ACTGGCTGACCATCGAGCAGCTGGCCGAGTTA 1827 28 100.0 32 ............................ CCGAGGATGGCGAACAGGAATGCCCCGAAGTC 1767 28 100.0 32 ............................ AGCTGGTAGCGCTCGGCGATCTCTGCCAGGCG 1707 28 100.0 32 ............................ TCGAGGGCGGCGGCGTGGTCACTGGTTGGTGT 1647 28 100.0 32 ............................ GGTCCAGAACGGGTAGGCCTCGTGAGCCACGG 1587 28 100.0 32 ............................ TCTCTGTCTACAAGATATTCTTGACTTATCAT 1527 28 100.0 32 ............................ ATATGAGCCTAGCGCCCCGATCATCCACTCCG 1467 28 100.0 32 ............................ ATCAACACGGCAGCTCAGGCGCATGGAGCAAG 1407 28 100.0 32 ............................ TGCATGATATGCGACGGTAAGTCTGGATGGCA 1347 28 100.0 32 ............................ AAAGTATCGAAGACGATATACCAAGGGATACC 1287 28 100.0 32 ............................ GTGTTTTGCGCAACACGTGTTGTCCATGCCGC 1227 28 100.0 32 ............................ TTTGTTGGGTCTAGCGGGTTCGTGATACCCGG 1167 28 100.0 32 ............................ TGATGGCGCTGCGCATTAAGGCCACCGACCAG 1107 28 100.0 32 ............................ ACATCGGCGGTCACTGTTTCGCGGGCGCTAGC 1047 28 100.0 32 ............................ GCTCGCGGTCAGCTCACGACGGATCGACGAGA 987 28 100.0 32 ............................ TCGACGGCGCGGGCCTGTGCCTTGGCGTAGTT 927 28 100.0 32 ............................ AGCCCTTCCTGAACTCTCACGCGCTCGAGCAG 867 28 100.0 32 ............................ TGATGGCGATCTAGTCACATACGAGATTGTCG 807 28 100.0 32 ............................ TGCTTGTATCCGAGAACCGTCTGCTTGTCGCT 747 28 100.0 32 ............................ TGACTGCGCAAGGACGCTACAGCAATGGCTGC 687 28 100.0 32 ............................ AACAGACTCCTCCTCAATGTCCTGAGTATAAA 627 28 100.0 32 ............................ AGTGAAACCAACGCCGCCGACACGCTGACCGA 567 28 100.0 32 ............................ ACCTCGGTGTCGCGGATCCGCAGCATCAGCTC 507 28 100.0 32 ............................ GCGTATCGAGGCCGCTCCCAAGTGGCAGGGTA 447 28 100.0 32 ............................ CTGAAATGCCGCTTCTTTCGCACTGGTTACGC 387 28 100.0 32 ............................ AGCGGGCGGCGTCCGTCAATACCAGAAGGTTG 327 28 100.0 32 ............................ AACGAGATAAGCGGGGTTCGAACGCGACTTCT 267 28 100.0 32 ............................ AATACCAGAAGGCTGAGGCCCGATTGTGGTCT 207 28 100.0 32 ............................ ATGTACGCCGCCGGTATCTGACCAGATATGTA 147 28 100.0 32 ............................ AGAACGGCAGCACCATTTGTAGAAACACCACA 87 28 100.0 32 ............................ TTAGCGTTGACTGGGCAAATATAACAAACGCT 27 27 96.4 0 ...........................- | ========== ====== ====== ====== ============================ ================================= ================== 96 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AACGGCTGGAGCAACTGATGGCGATGCCGTGGCTCACCGGCATGCGGGATCATGTGCAGCTCGAAGCCGTTCAGCCGGTGCCCTTGGAGGTGAGTTATCGGGTCGTTCAGCGCAGGCAGTTCAATACGGGCAGTCCAAGCCGCGCAAAACGCTATGCCAAGCGCCATGGCATCGAGTTCGATGAAGCGCAGCGCCTGATGGAGAAGCCCGCTGCACGGCAAATCGCCTTGCCATTCGTGCAAGTCAGCAGCCGATCCAGCGGTCAGCGCTTTGCGCTGTTCATTGAACACGGCAAGACGCAGTCGCAGCCCGCTGTCGGTAGTTTCAATCACTACGGCTTGAGCTCGGAAGCCACGGTGCCCTGGTTCTGACCCTTTTTTGCAAACCAAAAATGGGTCTTTTAAAATCAATTAGTTAGCGACATTGCCCAGAAAAGGGGGATGTCGCTTTTTTCATCCAAAGCTCTTTAACAATCAGGACGTTATTTGTAGTAACCTCTA # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54338-52209 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHOU01000020.1 Salinicola salarius strain 1A01339 scaffold20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54337 28 100.0 32 ............................ TGCTCGGCATCAAGAAAGGCGTCATTGTCGAT 54277 28 100.0 32 ............................ TAGATTGTCGATAGGCGAAAGGTTGGTTTGCA 54217 28 96.4 32 ..G......................... TTCAAGATGCGCCCATACACACGATGATTGGC 54157 28 96.4 32 ..G......................... GACAAAGCCGACGCCCGAGCGATGCAGGTTGC 54097 28 96.4 32 ..G......................... TTCAGTTGATCGATGTCAGCGCCATCAGGGTC 54037 28 96.4 32 ..G......................... TCGATAACGCGCACCTCCTGCTCCATGAAGGC 53977 28 100.0 32 ............................ CGACGCTGACAAAGACGAGGACGACGACATGG 53917 28 100.0 32 ............................ AGCCCGCCGCCGGCGATCTCGCGGTCGGTCGA 53857 28 100.0 32 ............................ GAGACGCGGATCGACGCCATGCGTCAGGCTTA 53797 28 100.0 32 ............................ AGCTGCGCGTAGTCGTTCCAGTCGGTCGGACC 53737 28 100.0 32 ............................ ATTCTTTGCGACGCCGACGCCAACGACTCAGT 53677 28 100.0 32 ............................ TGCTGGCCGCGCTCGAGATCCACCGCGAGATT 53617 28 100.0 32 ............................ TTGGACGTTGGCGCGGAACGTGTCGCCGTCAT 53557 28 100.0 32 ............................ GGCCGGCAAGGGTAGGAGTCGGGCAGTAAAAT 53497 28 100.0 32 ............................ AGCGCCTTGGACGCCGCAATGAACTCGCGCAT 53437 28 100.0 32 ............................ TCGTCGTACACCCGCTCGAAGCCATCGCGAGC 53377 28 100.0 32 ............................ GGAGGCGCGACAGTCCCCGGGAAGCCCTTGAC 53317 28 100.0 32 ............................ CAGGTGCTCGACGGCGGCGACAACCAGGCGGT 53257 28 100.0 32 ............................ TGCTGGCCGCGCTCGAGATCCACCGCGAGATT 53197 28 100.0 33 ............................ TCATCGACGCTTCGCGGAAGTCCCGCAAAGCAG 53136 28 100.0 32 ............................ TTGGACGTTGGCGCGGAACGTGTCGCCGTCAT 53076 28 100.0 32 ............................ GGCCGGCAAGGGTAGGAGTCGGGCAGTAAAAT 53016 28 100.0 32 ............................ AGCGCCTTGGACGCCGCAATGAACTCGCGCAT 52956 28 100.0 32 ............................ TCGTCGTACACCCGCTCGAAGCCATCGCGAGC 52896 28 100.0 32 ............................ GGAGGCGCGACAGTCCCCGGGAAGCCCTTGAC 52836 28 100.0 32 ............................ CAGGTGCTCGACGGCGGCGACAACCAGGCGAT 52776 28 100.0 32 ............................ GAGATGATCGAGAACCAGATGAACCGGGACAC 52716 28 100.0 32 ............................ GCAACGAGGACACCCTGCGCGTGCTGCCCCGG 52656 28 100.0 32 ............................ TCAAGGGCGAACTCGAAGCCCCGCCCTACAGC 52596 28 96.4 32 A........................... CAGGTGCTCGACGGCGGCGACAACCAGGCGAT 52536 28 100.0 32 ............................ GAGATGATCGAGAACCAGATGAACCGGGACAC 52476 28 96.4 32 ....................T....... GATCGAAGCACCGTGTTCGCTACCCGATCCGC 52416 28 100.0 32 ............................ CAGGGTGTGTCGTAGATGACCGAGCGCACGAA 52356 28 100.0 32 ............................ TGCCGGCGCGCGATGCACTACTGGATATTGAA 52296 28 100.0 32 ............................ CGAACGGTCTGCTCGACGTTGAGCACGGCGCG 52236 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.4 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AGGGGCTCGAGCTCCAAGTCCTGGCGCTCCAGGCGCAACAGGGCGCTGCCGACATTACGAGTGCCATGGCCATGGTGGCATCGCGGTTGAGGATAGTCTGCGTTGATGAACTCGGTGTTCGAGTGCGTATCTGCGTGAGGCTCAACGCCAACCTGGCCAGACTCAGTAGAGGAGGGAGCATCTGCCGAGGAGGGGTCATCTGCCATTGTGGCGGCGCTAGAGAGCAGTAGCACCATGCCCAGCAGGATGACCAGACCAAAGCGATGCCAGGCGGTGGCAGACCGCGAGGATTGCTTAGGAAATGACGTGTGCCTGGCCATGCGGCAGGGCTCCTGCAGAGTGATGTATATCTTAACCTAGCGCAGATTCGAACCTTGTCCATTGACACGGATCAAGACGGAGCTTGCCGTAAGCTGCAGCGGCCTCATTGAAGTGGTGACCTGGGCGAATGGCTGGGCAGCTCAGAAACGGCTGCAGGATGCCCTCGGGAACAGCGATGT # Right flank : ATGACAAGCGTGGCCATGGGGGCTCGGTCGGCCCGCCCAGATAGAACCATCGACCATTTTCGTCAGAGAAGCTCCGGCGGAGTCGTGCCTCGCATCCGAACACGAACCTATCAAGGCGCTGGAACCAGTGCTTTGTGAGTGGCTCCACATGATCACGAGTGACTCCTGTGGGGCACCTTGGGGGAAGCAGGAACAAGCCGGATAAACGGTGATCCATACAGCAATATAGCCCGTGTTTTGTCTATCAGTTTTGGGTGTTTCCTGCCCAAGGCTACTCGTCTGGCTCGGTCGCCGGTGGCTACCGGAACCGATCGGCGGCTTGCGCAACGCTATGGAAGAGGGCAGGATCGGGAAAGGCTCCTGTAGCCTTGACTGAATTGGCTCGGGCCCACATATATCGTATGCCTCGACGTGGAGAGATCATGCGAGGCGTGTCTTGAGCGCACGCTGTGCCGGCAGGGCAGCGTGTAAGGATGTGGCTTCTGGCCGGAAGGGAAGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //