Array 1 19584-18162 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUV01000113.1 Neisseria meningitidis NM3131 gnm3131.contig.112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19583 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 19517 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 19451 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 19385 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 19319 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 19253 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 19187 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 19121 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 19055 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 18989 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 18923 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 18857 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 18791 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 18725 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 18659 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 18593 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 18527 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 18461 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 18395 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 18329 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 18263 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 18197 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //