Array 1 17-289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSZJ010000017.1 Lactobacillus intestinalis isolate A52_44.LI.DSS, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 ............................. AATAATTATCTGATCTTACCTAGCATTTTACC 78 29 100.0 32 ............................. GCTATTAAGCAGGTTCAAGAAATGGATATTGA 139 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 200 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 261 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTATTCCCCACATGCGTGGGGGTGATCCT # Left flank : TCCATGAAGAAACGTCG # Right flank : AACCAGCAACAACAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGCGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15-1020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSZJ010000004.1 Lactobacillus intestinalis isolate A52_44.LI.DSS, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 76 29 100.0 32 ............................. CTAGGTTCGAGTCCTAGCGAGTCTGTTGCCAC 137 29 100.0 33 ............................. TCCTCTTTTTCTTCCTCCAGCCGCTTAACTCTA 199 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 260 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 321 29 96.6 32 ............................C TAATGGAAGATTGTTTCAGGCTATCGATGAAG 382 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 443 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 504 29 100.0 32 ............................. ACCAGCAGTGGCCATGCTCATTCCTTTTGATA 565 29 96.6 32 .....T....................... AGCTCAGTAGAAAGGAGAAAGCATGGCATATA 626 29 100.0 32 ............................. TTACTTTTGTCATTTTTAGTACCTCTTTCGTT 687 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 748 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 809 29 100.0 32 ............................. AATAATTATCTGATCTTACCTAGCATTTTACC 870 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 931 29 100.0 32 ............................. AACCAGCAACAACAGCTTCAGGCAAGAATTCT 992 29 79.3 0 ...........G.AA...A....A..T.. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 GTATTCCCCACATGCGTGGGGGTGATCCT # Left flank : AGGTAAAACAGTGTG # Right flank : TGGTCTCCCAATGACTCTAAACTTGTGGAAAATTATATTTTTGGAGGTTTCTTCAGATGAAGAAAAAGTGGATTGCTATTTTATTAGCACTAGTTTCTTTAGTAGTATGTGGTACAACAAGTACTCAAAGTGTAAAGGCTAGTACGCCGTCAATTAACTCAAGCTACTGGAAGCGTAATCGCAAAGTAATCGTGACTAGAAATGTAAAGATCTATAAAATGCGTACTGCTACAAGACAAGTAATTAAGTCTAATTCTAAAACTTTAAGGAAAGGCACGATAGTTTTTATAACCAGAAACAAATCTAAAGTTTGGATTTTTAGAGGTAGAATTCCATCCATAGGTGCAGCTTCTTTGAAAGGATATACTTGGGTAGCTGTTCAGAATAATAGTAAATGGATTGCTACTTACAGTAAAAGTAATGTAAAGAAGTACACTAAAAAATCTGTAACATCTTCTAAAACAGTGGCTTATGATGAAGATAATCAAGGAGATGAAGAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGCGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47246-47609 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSZJ010000004.1 Lactobacillus intestinalis isolate A52_44.LI.DSS, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 47246 30 100.0 37 .............................. ATCTCCTTGTTGAAATTTTTAATATGATTTTATATTT 47313 30 100.0 36 .............................. ATGCAACGGGGATGCTCGAAAAGCACTTGTGCTTAG 47379 30 100.0 36 .............................. AATTACCAAGAATACGTTAACAAACGTATTTTCGAG 47445 30 100.0 38 .............................. TTTTCCCAGTCAACGGCTGGAACAGCTTCACCCACATA 47513 30 100.0 37 .............................. GATGGTGAATATGTACTTCTTGCTAAACATTTAGGGC 47580 30 86.7 0 ..................G.A...A....C | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.8 37 GTTTTTATCTAACTTAAGAGGAATGTAAAT # Left flank : AATTTCCAAATTTGGGTCGACGAGAAGATTTGGCAAATTTTGAAGAGGTAAAGATTGTTGATATAGAAGAAAAAGATGAAGATATACCCGTAAATCATAGCGCGTATATACCAGTTCAAATGTCTGAAGATGTGGGTCTAGAAAATGATGGTGTTGGAAATAAAGGGACACATTATTATTTAAATAAGAATTATAAGTTGGTAACAATTAGAAAAGGTCAGACACAACGTCGTTGGAATAAAGTTGAGGCAATATATGCTTCTGGATTTGTAGTTTATAAATCATATGTTGATGAAGATGGCAATGTAGTATTCTTAGTTTAGAGCTGTCGATGTCCAATAATCAATTTTTCACCTGGGATCGACAGGTACTATTAAGCTTGATATGATAGCTTTTCTGAAATTTTATAGTAATTTTTATCAAAAATAGGATTATATTTAAGATGGTCGACAGAATCGGGACTGTAAAGTATTGATTTGTAAGGTCTGTCGAAGGGAACA # Right flank : CGAAACAACAGGATATTAGTTAGTAAAGAAAATTTAGAGAATAGTGATACGAGGTATATTGAAGTGCATCTTGCATTTACTCTATAAAATAGAAAGTGTGGAAAAATGAATGACTATTTAGGTAAGTCTTTAAATCAATCTGAAGGAAATCACTGTGAGACGATTGTAGAACATACTAATAATTTGTTGAGGCAATATAATTTATTGAAACAAACGTATCCTGACATATTTCAAAACTTTTGGCTTTGTCAGAATAAGTTCAATAATATGTTGGAGCAGCCAAATATTCATGGCAAGGATGACTGGCGACTCTTAGAAATTGCTTGTGCATATCATGATTTAGGTAAAATGAATCTACGCTTTCAGAAAAAAGTAAAGGCCGGGAAAAGTTATTGTGAAGATGAAATTCCTCATGCCTTGTTAAGTATTACAATGCTTCCAATTGAGGAGTTGAAAAAACAATATACAAAAGAAGAACTCATAGCCTTAATTTTTGCAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 52121-52348 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSZJ010000004.1 Lactobacillus intestinalis isolate A52_44.LI.DSS, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 52121 30 100.0 37 .............................. TCTTTTTATCGATTCGAGTATCCTTAGTGATAGTATC 52188 30 100.0 35 .............................. TTTAATGCGTTTGGTACTAGTCGCTTGAGGGTAGT 52253 30 100.0 36 .............................. GTCCCTAACATCAAGTAAAAAGCGGCTCTCGCATTA 52319 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GTTTTTATTTAACTTAAGAGGAATGTAAAT # Left flank : GCGTATGAGCCTTACATTATGGGATGGTAGTAATTATGTATATAATTTTGGTTTATGACATTGTAATGGATAAACAAGGCTCTAAAGTAAGTAGACATGTTTTTAAAATTTGTAAAAAATACTTAACTCATGTTCAAAATTCTGTTTTTGAGGGAGAATTAACCAAGGCACAGCTTGCAAGACTGCGAAGTGAATTAAATAGATGGATTAGAAAAGATGTTGATTCAGTAATTATATTTAAAAATAGAAATAAGAATTGGCTTGATAAAGAATTTATGGGACAGGATTTGACTGATTTAACATCGAATATTTTTTAAAATTAATCTGTCGATATGAGATATGTGGAAAAAACACGGAGATCGACAGATGAAAAGAATGCCCATATAATACTATTGTTGAATTATATCTAATAAGGTAAGTAATCTATATATGCTTTTTCGGTTAGGGCGACAGATATAGCTTTTGAAACTAGTGATATAGCAGGGCTTACGATGGCTAAG # Right flank : TGTTTACTAACACAACACTTATTCTTTCATTCCAAATGTTTTTCATGTTTTTATCTATTCTCTAAAATTCTAACTATAAAAGGAGCTCAAGAAAATTTTCTTGAACTCCTTTTTCTTTTATTTAGGCCAATTCTTAGCTAATTCTTTCAAGAAAGGTTGAATGACCGATCTTTGATTTTTTAGATAAGTACCATACAATTCGATATAATTGTCTTCATCCTTAATAGGTACTAAAATTCGATCATCATCGTCTCTTTCTTTATAACCAGTTGCTAAGGTTAGGTTCGTTCTAAAAACCGGAAAATTGGAATAGTGGGTTAATTCATCTAAAGCTGGCAGATCTTTTTGATATAAAAATTGTGCTTCTGGAATATGATCTTCAATTACTTGAACCCATGGCCCAATATCTTGAACTACTAAGAAGCTCAACCCGGCTAAATCTTTGAAAGTGACACTCTCCTTTTGGGCTAAAGGGTTCATTTTGTCAATGCGAACGGCTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 194108-193344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSZJ010000004.1 Lactobacillus intestinalis isolate A52_44.LI.DSS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194107 29 100.0 32 ............................. TTATTAAATCCAGATTGTCCTTTTGATAATCC 194046 29 100.0 32 ............................. CTAGGTTCGAGTCCTAGCGAGTCTGTTGCCAC 193985 29 100.0 33 ............................. TCCTCTTTTTCTTCCTCCAGCCGCTTAACTCTA 193923 29 100.0 33 ............................. AACTTCTTCTTCAGTCACGTCACGCGAAAAGTA 193861 29 100.0 32 ............................. AGCTCAGTAGAAAGGAGAAAGCATGGCATATA 193800 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 193739 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 193678 29 100.0 32 ............................. CTAGGTTCGAGTCCTAGCGAGTCTGTTGCCAC 193617 29 100.0 33 ............................. TCCTCTTTTTCTTCCTCCAGCCGCTTAACTCTA 193555 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 193494 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 193433 29 96.6 32 ............................C TAATGGAAGATTGTTTCAGGCTATCGATGAAG 193372 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTATTCCCCACATGCGTGGGGGTGATCCT # Left flank : AAATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCAATAATTAAAAAGAATAATAAGTTTCTTGATAATTATAAGTTGAGTACAGTATTGTCAGAATATAAAATTGAAAATCAAAACCCGCATCATGCAGATTTTGATGCAAAAAGTACGTATCAATTAGCCTTGAAATTGATTGATGGAGGAAAATTAAAGCTTTAAAGTTTTCACCGGTAATGAATTTAGCTTTAGATAATTTTCAAAATTAATTTGAACCATTGTATACGATCAATTGGGAGAGGTCTTTCTGAGTATTCCGGAATTATGAGTAGTTAAAAATAGGTTTACATTTAAGTAATACTATAACTTGAAAAAGCACTTAAAGAAGTAAAAATATTTGTAATTAGATCTCTATAATTTTATCGGAATATAGGTATGCAATCTAGTATTATGAAAGAAACTAATGAAAATTAGAGATTTTGAATTATAGAAATGGCTATAGATCGGCCTTTGTTTAGT # Right flank : NAAAAATGATCCGGATACAAACTCAGAGGTTGTTTGGCTTTATATTTGCTATTTAAAACAAAAATTGGTCTCCATTCAGAGTAATGTTCAAATTTTAGGTGAAAAAGATGGCAATTTTAAGTTAACGAAATGAGGTAATTAAATGATTCAAAAATTTCGCTAGCGATTTATTTCTTTATCCATTATTTCTCTATTTGTGATCTTATTTGTTTCGATTGGCAGTCTAGTAGCGATTAATTTTTATTGAATAAATTACCGTTGAAAACACGGGATTTTAATCCCGTGATGAAAACGGCTCTTTTCATCGTTTTCTTTTTAAAGTCTATGTTTCCTTCTTTTCCTTTGCTATAATCTTTAGAGAAAGGAGGGAACGAATGTGCTGACTGGAATAAAATTAAGACTCTATCCCAATCAAACCCAGGTGTGCCAGCTTTGGCAAATGTTTGGCAATGACCGCTTTGTCTGGAACAGAATGCTCGATATGATGAACGAGCGCTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGCGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 304096-304980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSZJ010000004.1 Lactobacillus intestinalis isolate A52_44.LI.DSS, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 304096 29 100.0 32 ............................. TTTTAACTTTACGATGTTTCAGTATGTCAAGG 304157 29 100.0 32 ............................. AATAACGTAATTACCATCACCGGTAGTTGGGA 304218 29 100.0 32 ............................. AGAGAGTTTTGAATGATTGATCTACTCCATTG 304279 29 100.0 32 ............................. ACAAGTCCCATAATTACATGAATTGGGTTAAA 304340 29 100.0 32 ............................. TGACTTAGCATCTACTACTTCAAAAGGCTTTG 304401 29 100.0 32 ............................. CAATGGGGGATGGGTACTTAATCCCAGAAAAA 304462 29 100.0 32 ............................. GATAAATTGGCTTCAGTTGCACGTGTTTTAGG 304523 29 96.6 32 ............................A AAGTGTTGTAGCTGGCCACCCGGCTATTTTAG 304584 29 100.0 32 ............................. TACCGACCCTGACTTAATTAAAGCAATCAATG 304645 29 100.0 32 ............................. ACTTTGTTGACTCTTTTATTTACCAAGTCGAA 304706 29 100.0 33 ............................. GTAAATTCATTGTAGTTAATGAATCCGATAATT 304768 29 100.0 32 ............................. ATAAACCCAAAAGACATACAGTATGTTTTAGG 304829 29 96.6 32 ........T.................... CAATATAATCAGTCTTTAGCCAATGCTGAGGG 304890 29 100.0 32 ............................. TATTCAGCGTCTTTATCTTCAGTAGTGAAGAT 304951 29 86.2 0 .....................T..T.TT. | A [304972] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATTGAAGGCTGCTAATCGTGAAAAAACTCAAAATAATCCACTAGAGCTTGCGATGGATTTACCTGAGTCAACATGACCTAGTTTATTCAAACTTGGACCATAATCTTAAGGTAGTCAATGAGGACTTTTTTTATTTTAATATGGCGGTCAATTTTCTAATAAAAAAATTGCTCCTTTTCTTTCAGAAAGAGGGTATGGCCCAATCTCCAATTGCTCGGTGAAATTATTGCTGAAGATGGTAGTTGATAAAAGTGATGCGGAAATTGTATAGTTCAATAGATGTAGTAAAAGCCCTAACTTGTAATAATGATCTTCATAAGAGTGCTTGTATTTTCTAATTATTTAATATAATAATTTAAGATTGTTATTATATGAGATAGCTATATATAGAAGAATATTTGATATAATTGAGTCGATGATTTGATGGGGAGGAAGTACAAACTAAAGAAAAATTGCTTTTCAGCAAATTTGAAATGGCTTAATGACGGCGTTTCTTTAGT # Right flank : TTGAGGATGAGTCCTCAACAAGAAAAATTATAGAGCTATCAACATGATTTCCTAAAGGTTGTTTATGGAAAATCACTCTAAATGTCTCTAAAATGAAGATGACATGGATAGAAAGGGAGAACAATTATGAACGCAATTTTTGAAAGAAGAGCTGTTAGAGAGTATAGGGATCAAAAAGTTGATGATGAGAAAATCAAGAAACTAATTGAATCTTTTCAAGCAGCTCCGTGTGCACTCCATCAAACGGATGTGATGGAATTAAGTGTAATTACGGTTCCTGAATTGTTGAAAAAGTTAGAAGAAAAGACTAAGAATTCGTGTTATAACGCACCTTTGGTATTTATGATTAATACTAAAAAAGATAGTCAATTTGGTGAGAGGGATGCTTTTGTTGCTGCTGAAAATGTGATGGTTGAAGCATTTGACTTAGGCTTAGCTTCAGTTTACGTAATGGGTGGTGTAATCGCTCTTAATAAATTTCCAGATTTACAAAAAGAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //