Array 1 417307-415269 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCU01000006.1 Bacteroides fragilis strain CL04T03C20 contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 417306 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 417229 47 100.0 29 ............................................... TGATTTGGCATCTGCTATTTGATCAATCA 417153 47 100.0 30 ............................................... GCAATTACCCCAATCCTTCATGCCCTGAGA 417076 47 100.0 30 ............................................... TTTGCCGGATACCTTAGTAGTGGTAGTCAC 416999 47 100.0 30 ............................................... GATAGCGGCGGGGGAGCGAACGGCAACGAA 416922 47 100.0 29 ............................................... AGAACCATCACGAATCAGATTCCAATACT 416846 47 100.0 30 ............................................... ATCCTGCGAAATTTCGACCTTATCGCCGGG 416769 47 100.0 29 ............................................... GTTATTGTAAGAGTCATAAAAGCGTGTAC 416693 47 100.0 30 ............................................... TTAAATACCTCGTCAAAAGCGGATTCCGCA 416616 47 100.0 30 ............................................... GTCTTGGGAATCTGTACGATTGTTGCAGAA 416539 47 100.0 30 ............................................... TCTTAACAATGCGCTGCATCTCTCGAATAA 416462 47 100.0 30 ............................................... CCACAAATCTTTATTCCAGTTGGCGTACCG 416385 47 100.0 30 ............................................... AAACCATTCAAATATCTGCGCAATTGGGTA 416308 47 100.0 29 ............................................... ACTGTTGAACTTTTTACTCGTAATCCTAA 416232 47 100.0 30 ............................................... TCAATTGACCCGAAAGTGCAACGGTCAGGT 416155 47 100.0 29 ............................................... TAAGGATAGGAATATTCAATCTTATACAG 416079 47 100.0 29 ............................................... GCATAAAGAACTGGCATATTACCACTGAC 416003 47 100.0 29 ............................................... AACAGAACTATCAGACACTATCTCTGAGT 415927 47 100.0 30 ............................................... CGAATGGTCAAAACTATGCTGCTCAGGTTA 415850 47 100.0 30 ............................................... CTCCAACTCTCGAAGAGCAGCAACAATATC 415773 47 100.0 30 ............................................... TTCTTGCGGTTTAAACACTTCATTAAAAGC 415696 47 100.0 30 ............................................... AAACTTAGTAACAGAACCGACAATATTAGA 415619 47 100.0 29 ............................................... TCTTTTAACCTTTTATTAGCATTTCTCAA 415543 47 100.0 29 ............................................... TGCTTAGTTATAACGCAGAATATGCACAT 415467 47 100.0 29 ............................................... AGTGTCTTAAAGAGGTGATTAATGAAATG 415391 47 100.0 29 ............................................... AGACTTAGCCATTTGTGTGGCATTCACCA 415315 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : TTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 273121-272577 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCU01000005.1 Bacteroides fragilis strain CL04T03C20 contig0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 273120 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 273057 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 272992 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 272926 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 272863 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 272800 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 272735 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 272672 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 272606 29 93.1 0 .........................G.C. | A [272582] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //