Array 1 140812-139679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCR010000010.1 Prevotella salivae strain SCHI0018.S.9 Contig_10_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 140811 30 100.0 34 .............................. TAGACACTGAAAAGGTTGATAAGTCAGTTATTCT 140747 30 100.0 35 .............................. GGTGTATATATAAGGCTTGGAAGATATGCGCTGAA 140682 30 100.0 36 .............................. TCGGAAAACTCAACACGATAAATAGTAATATCAGAA 140616 30 100.0 35 .............................. GACTGTATTTGAACCAACGAAAGACTTTATCGTAG 140551 30 100.0 35 .............................. GTCACGAACAAAGCTGACGTGAGTACAAAGAAAAG 140486 30 100.0 34 .............................. AGGAATGGACGGCCTTTAAGTGTTTGCGCTTGCA 140422 30 100.0 35 .............................. ATTCTCTGCCCCTACAACCTCATCGAGCAGCGACA 140357 30 100.0 37 .............................. ATAGCTGGGCCTTTAGAAGCCAAACAGAATGTGCGGG 140290 30 96.7 36 .G............................ TGGGAATAGGAACAGTAGCAGGAGTTGCAGGTGGCG 140224 30 96.7 34 .G............................ GATTCAAAAAACTTTAGTCTAAAATCTCCCATAA 140160 30 100.0 35 .............................. ATGGAACTAACGGCTGCAGCTTCCTCCATAGAGAG 140095 30 100.0 34 .............................. AAATAAACGACATTTGAATTAGAGATAAATAGCG 140031 30 100.0 35 .............................. TCATTGATATAAAAAGAGGTTGAAATACTTCCTTT 139966 30 100.0 34 .............................. TTGTGGTAGCTACGAGCAAAAATGGCGATGTTTT 139902 30 100.0 35 .............................. CTTGTAAAAACGTGGGCGGTTCTGATCCTTGTCCA 139837 30 96.7 34 ..........G................... CACTTGTTGTAGCGCAGCCCCATGGTCATGCGCC 139773 30 100.0 35 .............................. CCCGAAGGGATAGCCCATTTCAGAATTAGGAATAT 139708 30 83.3 0 ........C........TA......A...C | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 98.5 35 GTTATAATTGAACCTTAGTGGAATTGAAAT # Left flank : TTTAAGATGTATTGGTAATTATTATGTATGTTATTTTGATTTATGATGTGTCAGAGAAGCGAGTTGGTAAAATGCTGAAATTATGTCGACAATATCTTTGTTGGATACAGAATTCGGTGTTTGAAGGTGAACTATCAGAAGTTAAACTTCGAGAGTTACAGAATAAAATACATAGCTTAATAGATAAAAAAGAAGATAGTGTGATAATATTCTCCAATAAAATGAGTTATCACATGAGTAAGGATATTCTTGGTAGGGAGAGAATGACAACAGATAACTTTCTATAAAGTTGTCGATGTCTAAAAAATAAGATTTATTTTCATTTCCTATAGATACTAAAATTGCTCTTTGACTTATTGAAATACCCAGTAGAAAAGGAAATGTCGGTGCTCTACTAAAAATATCTCATTAGGTATCGACATTTTTTCAATGAATTTTGTTATCTTTGTATCGCTGAAAACATCAGTGTTTATTTGCTTTTCCTCTTTTTAAAGGAGTGA # Right flank : CATGAACACACAAACGAGTAAGTGCACGGCAATACAATTATAATCAAACCTTATTATACTTAAACCATCTTCATACTTAGCTATAATTGCAGCATGAGTATATTTATGTTGCACCTTCTTTTAGAAGGTTTTTCTGCGCGCCCCGTCTTTTTTCCCAATTACTTTTACATAGAAAAAAGTGGTAGTTCCTATGGTTTAATAAAGAAAGAAGAATTTAGCATGTCGGCTGTTTACGATATACCGAGCAATGTTCCCATGGTTTAATAAAGGAAAAGGAGAGGATGTAACAACTTTATTATTTTGAAAGGATGTCGAATAACGTGGTAACTATTCACGATGTTCATAAGTGTAACGACCTTATTATTTTGAAAGGATGTTGAGAGAAGAGTCATTTTACGCGATTTTTAGTTCTCAATTACAGACTAATTTCATAGAAAAAGGCGAGTAATTCGCATCAAGTGATCAGCTGTTATACATCCCCTTGATTAACTGTCAGGGGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //