Array 1 307559-306006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMFH010000001.1 Enterococcus faecalis strain U1909135 NODE_1_length_417071_cov_21.941649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 307558 36 100.0 30 .................................... ATCAGCAACGCTTTTCCATTCATCAGATTT 307492 36 100.0 30 .................................... CATTAAACAATACATCAATGGCATATGACA 307426 36 100.0 30 .................................... TTTTCAGCAGTCTCTGCTTGTAATAATCGA 307360 36 100.0 29 .................................... TTCGTGGATCGGTGAATACCCTTGATCAG 307295 36 100.0 29 .................................... TAGGTCATTGCCAAAATATCCGCTTCATT 307230 36 100.0 30 .................................... ACGCTATTATGCTATTCTGCGTGGTTGCAT 307164 36 100.0 30 .................................... TAATAACCTCACTTTCTTTTGACGCTACGG 307098 36 100.0 30 .................................... TGACGAAATTGAAATTCCTAGTTCGTGGAC 307032 36 100.0 30 .................................... TACAATACTAGCGGTATTTATGAACAATAC 306966 36 100.0 31 .................................... GACCACAGAAGCAAGCCGCTTTGCGGCGCAG 306899 36 100.0 30 .................................... TGGAAATAAACATTGAACGTACTGAAACAT 306833 36 100.0 30 .................................... ATAACTCTGAGGGAACTGTGACGTTTGGAA 306767 36 100.0 30 .................................... GAAATGGCTGATCTGGAATTTAATCTAAAA 306701 36 100.0 30 .................................... AACACCGCTTTAACAGAAGAAGCAAACAAA 306635 36 100.0 30 .................................... TCGGACCCATCTTTGTTTTTTGCACGCCAA 306569 36 100.0 30 .................................... TCAATTCTAAGTTTTTTATCTTTTTCGCTT 306503 36 100.0 30 .................................... TCTCAAAATACTCTTCAGATTCATTCGGGC 306437 36 100.0 30 .................................... TGTGACCATTTACAAATGGATCGTCATGCA 306371 36 100.0 30 .................................... ATCCGTTTCTTTGCTGATTTCGTCAACACT 306305 36 100.0 30 .................................... TGCAAAAGCAGTGATTGGAACTGCAGTAGA 306239 36 100.0 30 .................................... TCATGTGTCTGTTTTTCCTAGGCACTTCTA 306173 36 100.0 30 .................................... TTTATATACCCTTGTTTTTTCGACTGGCTG 306107 36 100.0 30 .................................... TATTCGGAAGGCAAGCGCATCGGCATCATG 306041 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTCATTATATCTTTCAGCAGTTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTACCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATCGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGATGACAATAGTGAGTGTGTCGAGACGTCAATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGATTATTGCGGAAAGAGTGAGTTTGGAATTTTAACCGTGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : AATAAGGAAGTAGGTTGGATGTACGAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTTTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTAACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGCCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTTTGAGTCAAGTCCAATCTGGCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 103126-102957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMFH010000009.1 Enterococcus faecalis strain U1909135 NODE_9_length_158292_cov_22.526754, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 103125 37 97.3 29 ....................G................ ATACTTCGAGATATGACGGGTTGAAATCA 103059 37 94.6 29 ............................G.......A TTACTTGTTAAGGCTTCAATTATCAATTC 102993 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 97.3 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : CATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAGAGGTCGGGACAGAAGTGTTTAACTCCGAGAAATAAGAAGGAATTTCCGAAAATTGTTCTATAATTTTTGGAGAATTTCGGCTTATTTCCGAAGGAGTTGCTTCTGTTCCCGCCGTTTATCAATTTTTAAGCCTGGGACAAAAATCCAAAGTGATTTTTGTCCCAGGCTCTTTTCCGCCAAGAAGGAAAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAAACTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : TTTCGGCAAGGCGAACCCTGGTATTTGGTGTTTTAGAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCGGGAGCTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //