Array 1 162369-160520 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNP01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1601 NODE_10_length_163384_cov_16.6081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162368 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162307 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162246 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162185 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162124 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162063 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162002 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 161940 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161879 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 161812 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161751 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161690 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161629 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161568 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161507 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161446 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161385 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161324 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161263 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161201 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161098 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161037 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160976 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160915 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160854 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160793 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160732 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160671 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160610 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160549 29 96.6 0 A............................ | A [160522] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16007-15064 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNP01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1601 NODE_1_length_437598_cov_16.8717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16006 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 15945 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 15884 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 15823 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 15762 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 15701 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15640 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15579 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15518 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15457 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15396 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15335 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15274 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15213 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15152 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15091 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //