Array 1 159744-160130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKPY010000001.1 Acinetobacter sp. SK-43 plasmid pSK-43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 159744 29 100.0 31 ............................. ATACTGGTACTAGCAAAAACTAGAGACGACC 159804 29 100.0 31 ............................. TAGTAATACGGGGGAAAAGTTGGAGCTAGCT 159864 29 100.0 31 ............................. ACCACTTCCCGTACCATGTCTGGTCAACGGT 159924 29 86.2 30 A...TT..........A............ TTGCAATCAAGAGAAGCTAACAATTCGCGG T [159950] 159984 28 89.7 29 ...-............A.......A.... CAATGCAGAGGCGGCAGCATTTAAAAAAC T [160011] 160042 29 75.9 30 .....T.........AG......AA..AG GGTCGTCCAGATTTGTGGGGACATAATGTA 160101 29 82.8 0 ...G.T.........T.......A...T. | G [160103] ========== ====== ====== ====== ============================= =============================== ================== 7 29 90.7 30 GTTCCATATCGTGTAGTCGATTTGTAGGT # Left flank : GGGGATAAGTTAAGCGTTAGTTCGCCGTGAGAAGTGTCCACTTCATGTTCGGAGATGACAATGTTTTGATTCTCTAAGGTAGCCAGTACAATTTTTAGCGTACTTGTAGTGAGAGAGTTGAAATTTAGCTGTTCTAACATATCGGAAACAAGGTAATTTTCTAACATAGAATGAGTTCCAAAGTTGATTTTTATATTATAAAACATATACCGCATAAACATAATACTTTTATTGTTTTTAAATGTAATTATGCTTTTAGATTTTAATTGCCACGTTATTGAGAACAGTCGGGGATTGAAACGCTATTTTTTTGCACCACCACCTCAGCGAACACATAAGCCGAATGCGTTAGCAGCCGGCTTAAAGCGCAAGCGTGCGCAGAAATGTCCATTAAAAAATCAAGTAAAATTAGAGGATGGTTCGCAATAGTGAAAAATTGTATTGTAAATGAAAATAGTATAAGAATTTGATTTATAATTATAAAGGTTTGATTTTCTACA # Right flank : TCTTAGTCGTCAATTTTTGTACAATTCACTCATTATCGGGAAGCCGATTTAAAGTACCCAAGCGGAATCTGTATCTTTTTTTTTGATGTGGTATCGAGTAATCGATTTGAAGCTTATCAAAGACTTGATATAAGAGTTCATGCCTCAAATATCGGAAAGCCGATTTAAATTTTAAGCTTGGTAAATTTATAAACGAGTGTAACTGTAAGCAAATAGGGAGTAGTAGGGGGAGAGGCTAATCAGTTACTAAATATTCAGGAGTTAGGTGCGTAAGCACCGGCGCAATCACAAGAAAATTATAATAATAAAAAACTCCACATTAGTGGAGTTTTTTATTAACTTTTTAAGGGTTATATTCTTCTAAAAAGACATGACTTTTAACTACTTTTTTTTCACCAATGCAGATAGCATCGTAAAAAATCTTACCATCCTCTTTGGGTTTTAAGTAAATAAACTGTATGCCCAATTCATCAACTTTATAGAAAAAATCACATATTTTA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCATATCGTGTAGTCGATTTGTAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 19209-19830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKPY010000060.1 Acinetobacter sp. SK-43 Contig59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19209 28 100.0 32 ............................ TATCTGTCCTCATCGGCGCACTTATTACACGT 19269 28 100.0 32 ............................ TAGTGAGTTCCAGTCACTGGGGCTTTATTATT 19329 28 100.0 32 ............................ TTTCCGTATTTCATCCAAAACAGCTTTTGTAA 19389 28 96.4 25 ...........................G CTCGAGATCAGATCGATACCTGTTT Deletion [19442] 19442 28 100.0 32 ............................ GCTCAGAACTTGAATCAGTTTTCTCAAAAGGC 19502 28 100.0 32 ............................ ATTGGTGTTAGCTCCTTGCCTGCCAATAGGTT 19562 28 100.0 32 ............................ TTAATCTTTTGAATTGTCTCAAATTTAGGGCT 19622 28 100.0 32 ............................ GTTTTACATTGAATTGCCCGAAATGTCACACG 19682 28 96.4 32 ......C..................... TAATAAGATGCTGGAATGATGAAGAAAATTTT 19742 28 100.0 33 ............................ AGCCTTCTGCTCAAAAGGCGCAGGAATCTCCAC 19803 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.3 32 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : TGGAGTGAACGCAATTTGACGTTGTAAATTACTCATTTCAATTGTATCAGCATCTACAATCGTGATTTTTCCAACGCCTGCTCGTGCGAGTAGCTCCGCACTAGTACACCCTATTCCACCAGCTCCAATAATCAGTACATTTGCTAATTTTAATTTTTCTTGAGCTTCAATATCCCAACCATCAAGTAAGATTTGACGACTATAAAGATGCATTTCATCATTAGTTAATTCAAATTCGTTTTCTGGATGAATTGACACACTGATTCTCTTGCTAGCACTAAAGACTTTAGATTTTAAGTATATGAATGTGCTAATGGAAGATAATTTTTTCCATACATACATTTTAACTTTGACTATATCTAGGTTTTAAACCAATATTGTAGGCACTCTTTAACAGCATAATAAAATCAATTACTTATGAATTAAGATTAAAACTTTAGTTATTTTATTTTTTAGAAATAACTCTATGTTTTATTTTGAAATTTTAGGTATATTTTATT # Right flank : ACTGGAAGCTTTCTTACTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : CGTTCACTACCGCATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //