Array 1 32738-33146 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFC01000017.1 Porphyromonas gingivalis strain 3A1 isolate 3A1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 32738 37 100.0 39 ..................................... AGCAACAGCGAAAACTAAACTTTTCATAACTCTAATATT 32814 37 100.0 36 ..................................... ATTATGCTAACTATCATCAAAATTGTCTTTTTCATA 32887 37 100.0 37 ..................................... TAATCATCTTTTCTCATACCGTTTATTGTGATTATTA 32961 37 100.0 39 ..................................... AGTAAGAACGTTTTTTCAACCCAGTTGGTTTTATCGGCA 33037 37 97.3 36 ....................T................ TATGAAGATTCTCCTTCTTCAGAAAACTCTTTCTTT 33110 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 99.5 38 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAATCACATATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTATTTTTCGAAAATCCAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAGGAAATCTCATTGTATATCAATGAGATATAATCAGCTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTA # Right flank : CACTGATTACCGAGGGTTAGAACGAACGCATACACAGAGTGTTCTGGAAGCGATGGTCTACAATCTTAAGCGCATGCCCGGGCTTCTGTGCTCTATGGCGTGAAATAGACGAAAAATCTCCTCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACATCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCCACGCTCTGAAAAACGTGGCGTGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTCTCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCTCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGTAAAGGAAAGTTCGGTCGTTTTCGGGGGGACAGGCTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 42242-43349 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFC01000025.1 Porphyromonas gingivalis strain 3A1 isolate 3A1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 42242 46 100.0 29 .............................................. TGGCGAACGGCCATCTTGTCCGTTATTCG 42317 46 100.0 30 .............................................. TCGAAGTATCTTTTATCCATAGACGAATCG 42393 46 100.0 30 .............................................. ACCTACGAGGTGGAATTGTTCTGACCGCTG 42469 46 100.0 30 .............................................. AACACGCTTCGCCTTGATAAAGTCAATAAA 42545 46 100.0 30 .............................................. CTCACCTTTTCAATGAAAAGATGAAAGCCA 42621 46 100.0 30 .............................................. AGCAATCAAGGATATAAAAAACATAAAGTA 42697 46 100.0 30 .............................................. ACCTCAGTAATATATCTGAGATGATTCATA 42773 46 100.0 30 .............................................. TCCAAAACCATATTAAGAAAGAAAACAAAG 42849 46 100.0 29 .............................................. AACAAGCGATCGTCGAACTCTTTTACGAG 42924 46 100.0 30 .............................................. TTCCTCGGCCATCTTGTCATCAAGTGCCGC 43000 46 100.0 30 .............................................. CTATTGAATAAGCCACCGACTGAAATGCAC 43076 46 100.0 30 .............................................. TGCACCGCGGTACGTGTAGTCGATCGGCAG 43152 46 100.0 30 .............................................. CCAAAATTTCAGACAACTTTATATCCGTCT 43228 46 100.0 30 .............................................. TCACACCTCATACACATTCTTTTGATTTGC 43304 46 97.8 0 ...........................................C.. | ========== ====== ====== ====== ============================================== ============================== ================== 15 46 99.9 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCTATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTCCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGTGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGATTTTTCTCGGCTTTTCAGTTACGCACAGTTGTTTTTTTCTTACTCACAACCACCCTCTATGTCCTGTATTACAGGTGATTACTGGGGTTGT # Right flank : TGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACAAAGATGAGTTTGGAATGATTCCAAATAAGCATCCATGGAGAAGAAAAAAGCAAGGGAAAAGTGGAGGGAAAAGGAACTGCCACGGATCGAAATACCACTTAAAACAAGTGAGACAACGATCTGCATATAAAACATTTTCAATTTATATATAAATCGTTTTTGATAAATATATAGATCGTAAGTGATTTGTATATAAATCGTGGGCTCAAAAAAGCCTTTTCCGAAGCTGATATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAGTCCAGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCTTGCTGCATGTGATTCGATGTAGCTGCACGATTCCCCTCTACAGTCTCGGACCGGATCGAGGACTGTCGCTGCTGTGCTGAGGGATCCGAATAGGAGCCTGTTCGGGCTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 29769-25402 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFC01000003.1 Porphyromonas gingivalis strain 3A1 isolate 3A1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 29768 30 96.7 36 A............................. GTTATCCTCGCTGTAAACGATCGATGCTTGCGTATC 29702 30 100.0 36 .............................. CAGCGTGGGCAAATATCAAACTGAGAGGTGAGATGA 29636 30 100.0 38 .............................. TATGCTGACAGCTTGTTTCTTAGCGACTTGATAGTCGG 29568 30 100.0 34 .............................. AGGCCTGCTCGATCGTTTTCGATTGAGGGTTGTG 29504 30 100.0 36 .............................. GCATAGCTCGAACGAGGAGTGCGAGGTGCTGACAGA 29438 30 100.0 35 .............................. CGCATGACGGGGTGATCTCCGACGAATTGCCTCCT 29373 30 100.0 37 .............................. AGAAACTGTTTGTAGTTCTCATTGCTCTCCTCCTTCC 29306 30 100.0 36 .............................. CTTCACGAGCGTGACGGCATCGACCTTGACTCTTAC 29240 30 100.0 36 .............................. CGGACGGAGGGGAAGCGGCTTTGCTCGCGCAAATAG 29174 30 100.0 36 .............................. TCAGAACAGCATTCTTCTGCAAGGAGCTTCTGTCGT 29108 30 100.0 35 .............................. TGTCCTCTTCATGTATGCGGATGAGGAGACTTGTT 29043 30 100.0 34 .............................. TCCGACAAACCTCAATCACAGACGGTTGTATTGC 28979 30 100.0 34 .............................. AGCCGGAAGCACAGGCCATCATAGATAAATACAA 28915 30 100.0 35 .............................. AGTATTGATATATGCCACCACATTCCTTTTGCTTT 28850 30 100.0 36 .............................. CGTCATATGACATCATTGAGTGCCATCTATCAGACA 28784 30 100.0 36 .............................. GGTAGGCTCTTTGCGCCTCTATGCCATCTCCGCCTC 28718 30 100.0 36 .............................. AGAGGCTTTAAGAAACGCCTGTAACAGCTTTATGTC 28652 30 100.0 34 .............................. ACAAAACCATCTCCCTCGACGAGTACTATGAAGG 28588 30 96.7 35 ........A..................... AACGTTGTAGAGTTCCCTATTCATACTATAGGTAA 28523 30 100.0 36 .............................. CAGGCTCCAGGACCAAGGTTTAACCCTACGTTTGAC 28457 30 100.0 35 .............................. CTTTGCCAACAACTCCAAATCATGACCTGATATTC 28392 30 100.0 36 .............................. GAGTGAGTTCTACAACACTAGCAAAAGAAACCGGTA 28326 30 100.0 36 .............................. AGTTGGTTATATAGCTTTTGCATCTCTTTGAATGCT 28260 30 100.0 35 .............................. CTCTCTGATTATTTTGCTATACTCGTCTATATCCG 28195 30 100.0 34 .............................. CACCTGCACCGCCAGCCATTTGGCGGGTAGTATT 28131 30 100.0 34 .............................. GTACGCCTCCCTGTCCTGTTTCGCTTTTTCTGCA 28067 30 100.0 35 .............................. GTGACCTCTCCGAGATTCTTAATCACAGCACAATA 28002 30 100.0 35 .............................. AACGCCGCCTTCTTGAACTCAATAGTGAGTTAGGA 27937 30 100.0 35 .............................. ATTTATACAGGCTAACGTCGAAAAGCTCCCCGAGT 27872 30 100.0 35 .............................. AAGACGTTAACGTTTTCACGTTCGCCAGCTTGTCG 27807 30 100.0 34 .............................. GCGTAAATGTCAATAGTATCGAATACGCGATTCG 27743 30 100.0 35 .............................. GCCATTTCAGCAGATGAAAAGATTTGCCTCGAAGA 27678 30 100.0 36 .............................. ATCACAACGTATTGGTCGCCCAGACCGGCATTGCCG 27612 30 100.0 36 .............................. GCACCGCGCCCAGCCTCCTCAAAGGACAGCTTATAA 27546 30 100.0 36 .............................. CAAGAAGATGAAGAAGAATAAGTACACCCTGCAAGA 27480 30 100.0 38 .............................. TGCAGGAGGGTCTGAACGTGCGCGTGATAGACTTGCCG 27412 30 100.0 35 .............................. TCATATGGTTGGGTTTGAGTTGTGTGTACGATGGA 27347 30 100.0 34 .............................. TTTTGTCCCGAGCCCCTTCAAACTAAGGGGAGTT 27283 30 100.0 37 .............................. TTCACCGGCGAGTCAAGAGAACAGTATGAAATAATAC 27216 30 100.0 36 .............................. ACCACGACAAGCGCATCGACGAAGTGCTTGTCAGCT 27150 30 100.0 37 .............................. TCCGGATACGACCCTTCGACTGTTACGAGTCATCTGG 27083 30 100.0 37 .............................. CAGATCGTACTGATAATTACGCTGCAAGGTCAAACGG 27016 30 100.0 36 .............................. AGGGCGGCGCATGGCAAGTATTGGGGAGAAGGTATT 26950 30 100.0 34 .............................. ATAGATATCCGATATGCAGAGATAATCATGCCCC 26886 30 100.0 36 .............................. AAGACAACTAAAGTCCTCTATTATGCTACCTTCTGC 26820 30 100.0 36 .............................. GCGTAGTGCGGCCGGGGATTTCGGCCGACACCCGGA 26754 30 100.0 36 .............................. CGGCTTTCAAACATCGCCGAGGGGGGCAGCTGCCTC 26688 30 100.0 37 .............................. TAAAGTGCCTTCATCTTTCCTGTGTACTTCCCTTTCC 26621 30 100.0 36 .............................. TTCCAGTGTGATAAAGAAAAACAAACAATGAGAGCG 26555 30 100.0 38 .............................. TTGCTAGTGGCTTTGTGCTGAACATTACACTGTCATCA 26487 30 100.0 36 .............................. TCTAAAATATGAATTTAAAGCTCCAGATACAGAAAC 26421 30 100.0 38 .............................. TTCTAGTTTTCTATAAGCTAAAGCACCTTGGTTTAGAC 26353 30 100.0 35 .............................. CGTCCTTCTCTTGTTTTTCTTTCTTACCTTCTTCT 26288 30 100.0 36 .............................. TAATAAAATTACAGAATAGGCCTTCCGAGTTAACTG 26222 30 100.0 37 .............................. AAGGTATTAACACCAATGATACCTATACTGATAGTGT 26155 30 100.0 36 .............................. AGTAGAAGGAGCAAAGGCTACCTCGGATTTAATCTT 26089 30 100.0 36 .............................. TTGGATGACAGCTGAGGTTGTGAAAATTCTAAAAGA 26023 30 100.0 37 .............................. CAGTCTCAATAGGTATAATCTATTTAGGTTTGTCTCC 25956 30 100.0 35 .............................. TGATCCCGTCTTCTCCTCTGCCCCACCGGCGCGGT 25891 30 100.0 37 .............................. CACGCCTTAAAGTCCTCAAGTGTGATTCCGTCTCCGA 25824 30 100.0 34 .............................. CCGCCCTCCGCGTGGATGACCTCCGCGTGGCCGA 25760 30 100.0 35 .............................. TGCCACCCGCAGGTTGGTTTTCGCAAGTGTCAAAA 25695 30 100.0 36 .............................. CCGCGGCCATCGAGGCCACCGCGGCCGTCCTCCGCG 25629 30 100.0 36 .............................. AATCACACCACCTGTAGTAGCACCCACTGCCAATAC 25563 30 100.0 36 .............................. TTAGTTTTTCCAACCATCGTTATGTATATAAGGCTT 25497 30 100.0 36 .............................. TAATGGAAAAGGTCTACCAATATAAGGTGTTTGACC 25431 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 67 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GTCCATGAGACCCAACTCTGTCAGTGCCGAACGAAATCGACTGATGGTGCTGTGGTCGGGAGATACCTCTTCCATCTTCAGTCCCAAGAATCGGGAAAAGGTGATTGAATCATTGATGCGCTCCTCCAGAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCCTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAACAAAATACACACTAATTGCCGTGCAAAGGTCTCAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGTGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 110551-109987 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFC01000010.1 Porphyromonas gingivalis strain 3A1 isolate 3A1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 110550 36 100.0 30 .................................... AGTTGATACGATTGGCAAGATGCTTGACTA 110484 36 100.0 30 .................................... CAAAACAATTTATTGGAAATCTTCTAAAAA 110418 36 100.0 30 .................................... CTTCTATTAAAGATTTCTTCAAATCAAAGG 110352 36 100.0 30 .................................... AGAGGGACTTCGTGTCGAGAATGGGGAGAT 110286 36 100.0 30 .................................... ACCTAAGAATCCCAGCAAAAAAGCCTATAT 110220 36 100.0 30 .................................... TCTTGTAAAATTAAGCGTTGCGCCTCCTCC 110154 36 100.0 30 .................................... AACTGTAGCGCTCTGCCCGGTTCATGAAAT 110088 36 100.0 30 .................................... AGATGGGGATAGTCCCGCTGTTCAGCTGCT 110022 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 6437-5873 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFC01000018.1 Porphyromonas gingivalis strain 3A1 isolate 3A1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6436 36 100.0 30 .................................... TATTTCCACCTCTTTTGACAGAAAATACCT 6370 36 100.0 30 .................................... CATAAGACTGTCTACTCGTTCTCTGGGTAT 6304 36 100.0 30 .................................... TACAAACACGGAAACCTTTGTTGCCATTTT 6238 36 100.0 29 .................................... AGAATGTTCCCTCGCTGTTTCTTTCTACT 6173 36 100.0 30 .................................... TATCCTTTTGACCGTATTTTCGTGTATTCT 6107 36 100.0 30 .................................... TATCCTTTTGACCGTATTTTCGTGTATTCT 6041 36 100.0 31 .................................... CTGCAGCACCTTTCCGAAATCCTCGCCGCGC 5974 36 100.0 30 .................................... TATATGCAAGTAGAACAGCGATGATTATTA 5908 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : TATTATTCCGAAAGGAGAAAGAGTGGAAGTTGTGCTGTTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGTCGGGAGCATATCGCCCGACTCTATGATCGCTACGGCAGTGAAGCCGATGTTTCTATTGTGGAGGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //