Array 1 37815-35602 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRAF01000004.1 Campylobacter jejuni strain CB372 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37814 36 100.0 30 .................................... ATTTTTTGACTTTCTTTCTCTAGCTTTTGC 37748 36 100.0 30 .................................... GAGTGCCTTTTAAAAATCTTGTTTACGAAA 37682 36 100.0 30 .................................... GCTGTTGAATCGTATTTAGCTACATAGCCA 37616 36 100.0 30 .................................... CTTAAGTGAGGAAATTATGACAGAAAATGT 37550 36 100.0 30 .................................... CGCTAACGCTACAAAAAAAATAAATTATCG 37484 36 100.0 30 .................................... TGAACTCATGAGACAAATAATAGCTTTTAA 37418 36 100.0 30 .................................... AAAAGGGTTTGGGTTAGGAAGATGAAAGAA 37352 36 100.0 30 .................................... AAAAAAATATACAGGCAAGAATACTCAATG 37286 36 100.0 30 .................................... TAAGTTTTCTTAAACCTTAAAAAGATTTTT 37220 36 100.0 30 .................................... AAAATGTGCTTTTTTTGCTTTTAAGCAAAA 37154 36 100.0 30 .................................... AATTTTCACCAAAACACCAAAAGCAAAAAG 37088 36 100.0 30 .................................... ATAATTTTTTAAAAATTTAGGAGTAAAATA 37022 36 100.0 30 .................................... TAATTTTTTAAAAATTTAGGAGTAAATTTA 36956 36 100.0 30 .................................... AAAGCCTTTATTTTTTCGCATAATCATAAG 36890 36 100.0 30 .................................... TAATCAGTCCTAAAGCTTATTTATACTTTT 36824 36 100.0 30 .................................... ACCTTTACTTTTAAACCTGAAAGTGTTTTG 36758 36 100.0 29 .................................... AGGGTTTGGGTTAGGAAGATGAAAGTTAG 36693 36 100.0 30 .................................... AAACGCACAGAATGCCCGTTTAAATGCAAA 36627 36 100.0 30 .................................... TGCTTGAACCAAAAGAAGTACTGATAAGAT 36561 36 100.0 30 .................................... TTCTAAAGTGTTGAAATCTACATACTCATT 36495 36 100.0 30 .................................... TTGTTTTAAAACAAGCCGAGAAGGATATCA 36429 36 100.0 30 .................................... TCTGTGTTAATAAAAGCAATAAGTATTACT 36363 36 100.0 30 .................................... ACAATTGTATCATATAATACTTAACAAAAA 36297 36 100.0 30 .................................... AAACGAAAATCAAGAGCAAGAGCAAAGCTT 36231 36 100.0 30 .................................... AAAATACAGGAAAGAACAGACAGAGAACTT 36165 36 100.0 30 .................................... AAATCAACTAACTCTAACTCAAGCTCAAGT 36099 36 100.0 30 .................................... AAAGAGTTAAAAGATCAAATAGAAGCAAAT 36033 36 100.0 30 .................................... CAAAGCTCCAAACCCCTGTCTTTTCGTGAT 35967 36 100.0 30 .................................... AAGCAAAAAGATTTAAAGGGAGTATATACG 35901 36 100.0 30 .................................... TCTCGTGATGAGTTAATTACATTTTTGGAG 35835 36 100.0 30 .................................... GTAAATCCGAAGTATGTCTGTGCTTTCGGC 35769 36 100.0 30 .................................... AAGGAAAGTCTATTTTGTTTTTTCTGACAA 35703 36 100.0 30 .................................... TCTACAAACGAAAATCAAGAGCAAAGCTTT 35637 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TTCACTTTCAAAAGACATGAAAAATACAATCTAAGCGAAGAATGGCTTAAAGCTATTGAAAATTTTATAAGACAAAAAGCTGAAAAAGCGTTAGAATTTATCAAAACTATTTAGATTTATATAATGATAAATGATTTTAGTTTTGATAAATTTGAAATTTATGAAAATTTGGTCTTTAAAAAAATACAGCAAAGATATAGAATAAATTTATAAATATAGCTGATACCTTCAAAGAAGGAATTTAAATAATGAAAAAAGAATAAGCTTCAAATCGCAGAACATATTTTACAAATTTGCTATTGAGGAAATGCTACTACAACCCCTAGTTTTATAGTAGAACATATCCAAGATAAAGACTTTGAAAATTTAAGCTTAAAAAACTTGAAATTTAGGTATAATACTGCTTACTATGTCGTTTCATAGTTAAGCCTTTAGGGTTATTTCCGCCAAGAGTGCAAACTCAAGGCGGGTTTTATTAATCAAATCTTGCTTTTTATTCT # Right flank : ATTCCTTTATCAAATAATGAAATTTTAAAGATTTTCGAGAATTTTTGATGAAAAATAGCAAAATTATGCTACAATATTTACAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTAAAATTCAAATAAATTTTGCTGATGGTATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATACCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //