Array 1 165212-164407 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKX01000005.1 Salmonella sp. S091_02751 NODE_5_length_281415_cov_174.106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 165211 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165150 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 165089 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165028 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 164967 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 164905 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 164802 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 164741 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 164680 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 164619 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164558 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164497 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164436 29 96.6 0 A............................ | A [164409] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183386-181344 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKX01000005.1 Salmonella sp. S091_02751 NODE_5_length_281415_cov_174.106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183385 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 183324 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 183263 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 183202 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 183141 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 183080 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 183019 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 182958 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 182897 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 182836 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 182775 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 182714 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 182653 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 182592 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 182531 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 182470 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 182409 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 182348 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182287 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182226 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182165 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182104 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182043 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 181982 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 181921 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 181859 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 181798 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 181737 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 181676 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 181615 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 181554 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 181493 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 181432 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 181371 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //