Array 1 52973-52213 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOFC01000021.1 Escherichia coli strain 451 BN4_451_1_(paired)_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52972 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 52911 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 52850 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 52789 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 52728 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 52667 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 52606 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 52545 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 52485 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 52424 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 52363 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 52302 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 52241 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72129-71051 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOFC01000021.1 Escherichia coli strain 451 BN4_451_1_(paired)_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 72128 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 72067 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 72006 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 71945 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 71884 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 71823 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 71762 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 71701 29 96.6 44 ............................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 71628 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 71567 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 71506 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 71445 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 71384 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 71323 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 71262 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 71201 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 71140 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 71079 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ============================================ ================== 18 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGGAGCGTAGAGATTCTCGAAACCGATCCGGAC # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //