Array 1 171158-170580 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOR01000005.1 Ligilactobacillus ruminis strain BIOML-A4 scaffold5_size184856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 171157 28 100.0 33 ............................ TGACGACGTTACTATCAGCTGGCCACCGTCCGG 171096 28 100.0 33 ............................ CTCCCTTTGGGGTCGTTGGGCTATGACCTCAAA 171035 28 100.0 33 ............................ TTAAAGTGCGGGCTCTTTTTGCAACCGAAAGCG 170974 28 100.0 33 ............................ TCGATTATACAGGATTCATGACAACCACGGCAA 170913 28 100.0 34 ............................ TATTTTCGATGTCGTCATCCGCTTTTTGTCTCAG 170851 28 100.0 33 ............................ CACAAGAAGACGTGGAAGAGAGCATATCAGACC 170790 28 100.0 33 ............................ CAAGGTCTCCGTCAGCGTTTGTCTTGATGTCTA 170729 28 100.0 33 ............................ TTGGTGGTGGGATAATGAACATGATTTTCTCTA 170668 28 100.0 33 ............................ TGAAATACAAAATCACGTGCAGAACATATAGGG 170607 28 89.3 0 ........................T.AT | ========== ====== ====== ====== ============================ ================================== ================== 10 28 98.9 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TGCGGGGGTGATCCTACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGA # Right flank : GAAGTTATCATAGATAAATATATGAAAAAATTAATGAGACATACTGTTTGAATATTCCTTTTCTGACAATTTTAAACCGCCATAAAACGACAATTTAAATCCACCTTTGACAATAAAATTGATAAAATACTTAATTGCCGCAAATTTGCGGTAATTAGGCTTTTTTTAAAGCGTATACTCAAGTTATAGCTGAAATTTTCGTATTGTATTGGAGGAATTCAAAATGAAGGTTAAAACATTTTTATCTATAGCATGTTTGAGTCTTATGCTTGTCGGTTGTGGTAACGATACTGTTGACAATTCTGGCAAAAGTGTAGAATCAACCAATAATAAAGTTTCGAAAGTCAAACACAAGAAACCTAAAAAAGATCCGCGTGAGGTCGTAAATGGAGAACTTCTTAAAGTCGGACAATGGTGTAATGATGATGAGCAAGGGAAAATGGAGTTGTACAAAATTTGTGTGCCTGGGACGGTAATTGATGATGGATCAATCAAGTGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172100-171644 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOR01000005.1 Ligilactobacillus ruminis strain BIOML-A4 scaffold5_size184856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 172099 28 100.0 34 ............................ TAGCGCAGAAAATTGCGAGTTTGTGAGGTGGATA 172037 28 100.0 33 ............................ CGGGAACGCTATCAAGAATTACGTACTCTTCGG 171976 28 100.0 33 ............................ TTGAGGTTAAATATTTTGGTGGTCAAAAAACCA 171915 28 100.0 33 ............................ TAATCGTATTGAATCCCTCGTTGATTCTAAAGT 171854 28 100.0 33 ............................ TCAATGTACCAGCTGTTGCGGTTTTGTTTTGCT 171793 28 100.0 33 ............................ TGTTGCCCCCGTTTATCCGTCTGATAGCGTTAA 171732 28 100.0 33 ............................ TGTTGACATCTGGAATCTGCGTGGCAAATCAAC 171671 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTTACCAATGATGTCATTATATCTTTGGCAGCAGTAAAGGGAGCCACTGGTGATCGGTTCTACAAACTTATAAGGACAAATAACTTGATATCACCCAAGATAGTTGCGTTAACAGGTATTACGAATGAAAAGCTTGAGAGTGAGGGCGAGGACATATATGCTGTTTTGAATGAATTTAAAAAATTCATAGAAGATGATATACTGATAGGGTTTAACATAATGAACTTTGATTTAAGATTTATTAATGCCGCAATGATAGCAGCCGGAATAGAAGAAAAAATGAATAATACAATTATTGATTTGTTGCCAAGGATAAAGAAGATAGATTCATTTTTGGATAATTATCGTTTTGAGACTGTGTTAAGGGCCTATGGTGTAACTAATAATCTTCCGCATAATGCTTTGTCAGACTCCATAGCTTGTAGGGAGTTAGCTGTCAAACTAATGAAAAATGGGAAGTTGTCATTTTAGAAATGCCGATATATAAGGGATCTTTTAGT # Right flank : TACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGAGTGTTCCCCGTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //