Array 1 374970-374143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000002.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_2_length_418566_cov_267.016550, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 374969 36 100.0 30 .................................... GAGGAAAGTTCTTCTTCAAGTATTTCCTCG 374903 36 100.0 30 .................................... AAGCTGACCCTGCGCGTTAGCGCAGAAGCT 374837 36 100.0 30 .................................... TCGAAGCCTATCAACTCTAAGGCTTCGTCA 374771 36 100.0 30 .................................... CGCGGTATCGCTATTTAAATAATCATTCTG 374705 36 100.0 30 .................................... GAGATCTTAGCGAAAGTATGTCGCAAAGTA 374639 36 100.0 30 .................................... CGAAAATGCTGACAAAAAAGAGACGGACAA 374573 36 100.0 30 .................................... TTGGTCATAACATTATTATCTTTTGCTTTA 374507 36 100.0 30 .................................... TGACGCGGACATGCCCACGCTATATTTCTA 374441 36 100.0 30 .................................... TACCACTTCGCAAACAAAAAAAGACTTTTA 374375 36 100.0 30 .................................... TGGTTTAACGAATGAGGTTCCGATTGATGC 374309 36 100.0 29 .................................... TTGATCTCTAAAGCTAACTACCTTTTCAC 374244 36 100.0 30 .................................... ACTTTCGCTTCATCTCTATCGATATAGTTA 374178 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Left flank : TGAACTTACTAATTTAAATAGACATCGCTATGAGTAGATTTATGAGAATAATTGTCTTTTTTGATCTGCCGGTTGTTCTTAAAAAGGAAAGAAAAGCATATTCGCAGTTTCGAAAATTCTTATTAAATGATGGATATGTTATGTTGCAGTATTCAGTTTATTCTAGAATTTGCAATGGTGAAGATGGAGTAAGAAAGCATATGAAAAGATTGCGTGAAAATCTTCCTCCAGTAAATGGTGCGATCCGTGCTATGAAAATTACCGAGAAACAATTTGAAAATATGGAGATTTTATTAGGTACAACAGTTGTAGAAGAAGAATTAGGAGCAAAAAAAATAGATTTCTTTTAAAAAAGTGCTTGCAAATTAATTTGCAAGCACTTTTCAGCCTTTATTTCATAAAAATTTAATGAAAAAAAGATAAATATGTGAATAAATAGGATTGTTTTTAAAAATACAAAACCCTTGAAACGGGAAGCATCAAGGGTTTTAGAGCCATGT # Right flank : TGGTTTCCTTAACAATCTTTTGCTGTTTCATCATATCACATTAGAAATAAAACATCTTTAGTAAATAATAAAAGGTTGACAAAAACTAAATTGTCTGTTTGGTATATTAATGTGTATAATTTTAATAGTATTCAAGAAGTGACCTCTTTACCAGGGCAACATACATTTATGATAGAGTTCCACTTTTTTTCGCTAGGATTTTGAAGAAATATCCCCGAGAACTATTTTATACATACTAATAAAAGTTAAAAGTACTGTAATCAAATTATTAAATGGATACCAGCAATGCCAGAAAATAAACATGTTAAACAGCCAAAAAATATTGAATCTAAGTCAATCAATGAAATTTCAAAACGAACAGCTTTTAATCAAGTAACTATTAGGAGGTTTAGGATTCAAATATAATCTGAAATAGTGTTTATTATGCTATACTACTTGTAACAAAAGAGAGCTCAGCATATACATACAATAAAGGGTGTGAAGTTCATATGCGGGAACGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 13218-14045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000037.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_37_length_41240_cov_329.521148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 13218 32 100.0 33 ................................ ATGCAGAATCCTTTGAATACATGTTTAACGCCA 13283 32 100.0 36 ................................ TAACTCATTTTTAACCAATGTACGCAACCTATCCAA 13351 32 100.0 33 ................................ CTCACAATTAGTTTATTATATGTTAGCTAATAT 13416 32 100.0 35 ................................ ACTCACGATCCAACCACGTTAATTAGTAGCGTTGT 13483 32 100.0 34 ................................ ATTGTTTTGAGCGTAGCGAAAAACTAGTTCTTTC 13549 32 100.0 34 ................................ CTACTAATAATCTTTTCAATACCATCTTTACTTG 13615 32 100.0 35 ................................ TTATTTGGATCTTTTGCCGTTGTCCACAACAACCC 13682 32 100.0 34 ................................ TCGTGTTCCAATATAAAGGATTTCTGTTGTCGTC 13748 32 100.0 35 ................................ TACGGGAGTAGATGAGTTTACCTATGCCCCATTAG 13815 32 100.0 32 ................................ CGTTTGTAAAACGAGGGGAAACGGAAGGCGCT 13879 32 81.2 36 ....TCG.ACC..................... TTGTCAATTTAGGTATTGCTATGGCTCCGTTAGGGG 13947 32 100.0 35 ................................ ATTTGAGCGACATATTCTGCGTAGGCTCGTTCGTC 14014 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CGAACAAGGAAAAAACGAACCATCTATTGAAACTATCAGAACACTAGCAAAGCTGTTCGACGTCTCCACAGATTATTTACTAGGTCTGATTGATCAACCCAAACACCCCATAAATTTTACTATAAAAGATGATTTCACATTAACGGAGTCAGAATTGCAAACCGTCAAACAAATGAAAGAGCAACAACTACTAAGTGAATTAAGTGAGAATCCTGTTGAAAATGTGGAAAAACTGACGAAGCTTTGGAAATTTATTAATGAGTTGTAGGGATCGGTGCGAGGTTACAGAGTTTAAAACTAACTATTTGGTTAAAATTATTTGATTGTTTTGGTGCGAACCTGAAGTGCACATAAAAACACAGGGGGATTCGCACCATTATTTCATTGTTTTTTGTTAATATTTGGAATAAAATATATGGTATTAACATTGGTTTATAATATTTTTCTTTTTAATGGGTCATTTTTTAATGTTTTTTGTAAACTTTTAGGAAAAAATCGCT # Right flank : TGCGTCAACATTAATTTCACTCATATCGTTAACAATAATGGCTATTTTTAACCCTTTCTGATTTTCAAGAAGATGATTGAGCAGAGATGTTTTACCTGCTCCCAAAAAACCACTTAAAACGGTTACTGGTATTTTTTTACTCATTGATCTTCCCTCCTCTATCATGATCCATATATGCCCGACTAGGTGTAGCGCCTTCTTGAAATAAATACTTTCCACTATACCCTTCTGTAGCTTGATCAACTTGCACTATTACCAGTTGGCAAACTCGCATACCAACCTTCAATTGAACAGGGACTCGATTTGCATTAAATAATTCCAAAGTGATCTGCCCAGAGAAGCCCGGATCGATCCATCCAGTATTTTGAATAAAGACACCAAATCTGCCGATAGAACTTCTCCCTTCAACAAAGGCTGTTAAATCGTTTGGTAAACGAATTTGCTCTAATGTTGTTCCTAACATAAACGTGTTAGGCGGAATCGTGACGACTTTCTCATCT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33905-34271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000037.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_37_length_41240_cov_329.521148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 33905 32 100.0 35 ................................ CTAAATCAGATAGGATTGTTGTTAGGTTTTTACCT 33972 32 100.0 35 ................................ TCGTACTGGTGTATGTTTAGACGACTGATATGCGC 34039 32 100.0 36 ................................ GCAAACGAAAACCTCTATGATTATTTAAAACCATTT 34107 32 100.0 35 ................................ TAGTTGTGCACGTACCATTTCGGCAATGCTTGCAT 34174 32 100.0 34 ................................ ATCTGTAAAACGGAGCTGCCTTTTGCTGCCTCTT 34240 32 90.6 0 .......................A..A....C | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 98.4 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTCCTTAATTTATCTACTTTTAACTTAATCATTTATTTTTTCGATAAATATAGCGGTATTTTGCTTAAGTTTGTCGTTTATACTGCTGGAGTAATTTAATTTTACTTTTCAATTTACAGATCACCCTGTGAATGAAATTGAAACACCAATTATGCATTTTGATACTAATTGTCGAAATAATTTAATCTACAAAGAGGAAAACATCATTTTTTGATTTTATTTGCACATATTTTAAGATTCTTCCACTTGTACGATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATTTTGTTTTTGGTAAATAATTGGGGGAAAATGAAGAGAAATGGTTCATTTTTTTACTTTTCTTCTCTAAAACAGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCA # Right flank : CGCACTTATTGTTTAGCAGACCCTTGCAAATCGAGTAGAGGGAAAAGCTAGATAACTTTTCTCCCCTCTCACACCACCAGTATATACGGTTCCGTATACGGCGGTTTCATTTGGGATCAGTTTAAGCACTCTTGGGTCTTTGATCTTCTGACTCAATGTGCGCATTAATCTGTCGTGATGTACTTTATCGAAGAACTTCTCTAAATCCATATCGATAACCCAACGATAGCCATCTTTTATATAGCTTCTCGCTTTCCTGACCGCGTCATGTCCTCGTCTATTCGGGCGGAAACTATAACTGTGTTCAGAGAATGTTGGGTCATAGATGGTTGTTAGAACTTGTGCGATTGCTTGTTGGAGGAATCGGTCTAACACGGTAGGAATTCCTAGCTTCCTCATTCCGCCGTTTGGTTTCGGGATTTCGACACGACGAACGAGTTGAGGATAGTAGGTACCTCCTTCGAGTTGTCCTCGAATGGAAGCCCAGTGTTCCATGATAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 245-944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000011.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_11_length_147036_cov_326.360107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 245 32 100.0 34 ................................ CATTCTTGAAGTGCGATCACCAGTTTCAAAGATC C [258] 312 32 100.0 35 ................................ TTCCTTTGCATCAGATACGTATATCTCGCATTGTT C [325] 380 32 100.0 35 ................................ ACTTAAAAAGTTTGCTATGTTCCAACTGTCATAAC C [393] 448 32 100.0 34 ................................ AAAGAAGAACAGGAAAAAGAAACAGGAAACTATA C [461] 515 32 100.0 35 ................................ GCGTAGGCTGTATGAAAATATGGTGTTCGTCCATC C [528] 583 32 100.0 35 ................................ CGCTCCTTCGATTAAGGCTTTGTCGCTTATGCGCT 650 32 100.0 33 ................................ CTGCCATTCTTTTTTTATTTTGTCTCTTGCTTC 715 32 100.0 35 ................................ ATCAAATGACTGGCACAAAAAACGTATTGCTTGGT 782 32 100.0 34 ................................ CGTGTTGGACTGTATACTTGTTGCTTGGTCAATT 848 32 96.9 33 ...................T............ CATCACATCGTTATAACCAACTTCGTAATTCCC 913 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGTTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATATTATTTTTGGCAAATATTGGAAAAACGAAGAGAAAACGTTCATTTTTTTAACTTTCCCTCTCTAAAACTGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCAG # Right flank : TGTCGCACTTATCGTTTAGTAAATCCTTGCAAATAAAATACAGCACCTCATTTTAAAAAGAGGCGCTGTTAAACTGAAACAGGTATTCAGTTAAATTTCGTAAAATCACCCGCTAGAAAATATCTGGGGAAACGTCAAAATCTAAAACACAATATAGCCTAATATATTTGTACTTATCCTTACTATTATTCACTAGCTAACTCCCCCATACTCCTTACCTGAAATCCGGTTTAAATTCTCCAGTAACTGTTTGATGCCCATTGTTGCGCTCGTACTGTTCTACCCTTTCTAGTTCAAAGCGATCCATGATAGGAATGTCATTAACTGAAAATAGGTAGGAATCCTCTGCTGGTACATGCTCATACCATGCCCAATTTGGCACAACAAAATAGTCGCCTGCTTTCCAATCGAATCGCACACCATTTATAATGGTATAACCCGATCCTTTGTAAGCATGATAAATAGTAGAATGGGTATGACGCAGTGATTTTGTATTAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 107311-108005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000011.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_11_length_147036_cov_326.360107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 107311 32 100.0 35 ................................ GCGTAATAATCGTGGATATTTCTCTGTAGGTATTT 107378 32 100.0 34 ................................ TCTTTTTTTATACGGAAATATTACCTATACAATA 107444 32 100.0 36 ................................ TTTTTGTTTACTTATTTTAACATCAGCGTGTACGTT 107512 32 100.0 34 ................................ AATATCTATGCAAGCCAAAATTAATACAATACTT 107578 32 100.0 35 ................................ TCGATCGGGAGGTCAACGTGCCATCCTCTAGCCTT 107645 32 100.0 33 ................................ TTCGAGGAGACAGTAAGCGATATGCTGAAACAA 107710 32 100.0 35 ................................ GGCAACGAGATGCTTTAATTGCCCTGTTTCTGGGT 107777 32 100.0 34 ................................ CAGACCCGCCCGTCTGGTCAAATCTAAATCTTAT 107843 32 100.0 33 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAA 107908 32 100.0 34 ................................ AGTAACGTGGACTATGGCAAAGCTGTTGTAAAAG 107974 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGAAGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCCTTTACAGTGTTTGAAGATGGGAAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTCATCTCAGAAAAGAACCATTAACTAGGTAGTGATTCTTTTGTTGATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGTCGTATAATAGAGGTGCATAATTAAAATTAGCTTATTTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAACCACTTTATGGGAATTTATGGAATTAAAATAACGATTATTTAAGCATTATTATTGATTTTCTCTTTAAAATAAGCATTTTTATACGACTTTTGTAAATTTTTAGGAAGAAATCGCA # Right flank : TTTTAGCAGCAGAGTTTCGAAGGCTAAGTATAGGTGTGTGATTGGAAGAAAAAGAATCAACTGCTTTATCAAATAGTGGTAACACGGAAATAATCTAACCATGCCAATAAAGTGAATCTTCAATCAGTGGAGGTTTACATTCGTTCCCCCACTGATTGTTAGTATGGTATGACCTAAAGGCCTCTGCACAAATCGAGTATTTAGGTGCTGCTGTTATCTCCCACAGATTATCCAACTCCTGAAGTGGGAGTTAAAGCACCTTATGTACAGGATAAAAACAGAACTCTGTAAAACACTCAAAACATTAAGCGTTTAACATGTGATTCACCGAAAACTTTAATTTTTCTAACCCATCATATAATTTCTCTTTTGGACAACCTATATTCATTCTTAGAAATTTTTCAGTTTCTCCGTATACTTCACCAGACATAATACCTACCTTCCCTACATGAACCAAATAATCTTGAATCTTCTTATTACTTGCGTTTAGTTTGCTAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 113777-114008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000011.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_11_length_147036_cov_326.360107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 113777 32 100.0 34 ................................ TGCTAATTGCCTTTGATTGGCTGTACTTGCAAGA 113843 32 100.0 35 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAAAA 113910 32 100.0 35 ................................ GTCTGGTGCGTGTATTCTTGCACCAACGTATAGTC 113977 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTATTTATGTGTAAAGGCACCTCAATCCCTCCCACTAGTCATCATTATATCTCAGTTAAAAAGGCTTAGACAGACATACTTTTTCCATTATAAAGTGGAAGAGTGTTATTGAAAGATGATGCTTAAACCGTTGTTTGCTAACTTAATTATCACGTTTTTATTTAGATTTTCTCCAATGTTTAGCGCTCATTGACAATTGAATCTAACTTCATTGCAACTAGTTTGGACAAATAATAATTTTATTCCTTTTGTTGATTTCATCATAGTTAAGTGATCTTTATTTTAAACTATCGTATAATAGAGATACAAAATTAACATGAGCTTATTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTCAACTATTTTTATGGGAATTTATGGAGTTAAAACAACGACTATTTAAGCATTATTATTGATTTTCTCTTTAAAACAACCACTTTTATACGACTTTTGTAAATTTTTAGGGAGAAATCGCT # Right flank : TTCATCAATATCGGTTGCTTGTACAGTTATCTTTTTGTTGGATAGGTTACACTTGACTAGACAAAAAAATTAAGGTGAAGTAGACTAGACGGAATATAATAATGGTTCATGATAAAAAAGGAAATTAATCATACAAAGTGTCTTTACCCGGAGAAGCAGGCATGGTACCCTGCTTCAAATACTATTTCTTCTATTTAACATCCAAACTTTTTAACTCACCACATAGTATGGACAAAAAGGATAAGGCTAGAAGCGGATATCGTCTAAAGACGGAGGAATTAGACCACTCGTTTGTAAGTTAAATCAATCAATTTTTAGTTCACATTACATCACAATCTATATCGTAATTATTATAAACATTAATTTAAAATGGTTAACAGCAAGTAAATTCTTGATCTTTTTATTAATCATAATCATGTAATATTGACCGTTAACCCCGCTTTTGCACGCTTCAATCATTTTGCTATAGTTCACGCAATATAGCCGTTTTCCATAGCAAG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 121475-121838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000011.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_11_length_147036_cov_326.360107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 121475 32 100.0 35 ................................ TTTATACCTAGATAAAAAATCATATGATAAAATAC 121542 32 100.0 34 ................................ GCACCAAACACCGCCAAGTCAACGTCCAGATGAT 121608 32 100.0 34 ................................ AGCGTTAGATCAGTTTAATTCTGATTATGGGTCC 121674 32 100.0 34 ................................ ATAGTCGATATTTTCGAATTCCCTTGCTATGTTT 121740 32 100.0 35 ................................ CTTTTGAACATCAACAATAGGCAGGTAACCATTGC 121807 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CTGGTTCATTGCTAGTATCCTCCTATAAATATCTTCTTTTTCTAACAACTTCAGTTTACACGGTATTAATCGACAAATTAATACCGCTTTTTTCATTCCATGATGAAAATAACCGTATTAATTCACTGTTTTATTTTAGGTTATATAATGTTGCTTGGAAGAAATCATTTGCTGTAAAAGCTAAATGTTTTACCATTGAATGAAAGTTAAATCGTTTTCAAATATATCACCGAGATCTTAATAAAATTCTATTACACCTTAAATGACTAATTATGAATTATGCCTTATAATGAATACAGAATTATTAATGCCATTTCAGTTGATTTTTTTGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGGGATTCGCACCAAAATTCACTTGTTTTTGTGGTAATATATGTAATATAATTCAACACAATTAGCATTATTTACGATTTCCAAGCTAAAAATATGCTGTTTTTTGATTGTTTTTGTTATTTTTAGGAAGAAATCGCA # Right flank : TGCCGTATTTTTAAACTTTTTATAGTCCGTTTTAGTCGCACCTTATATAGATACAACAAGCTCAGAAAAAATGAAATCGCTCGCACACACCCTATTGCTACCAAATCTCTAAAAGACATGAACCAAATAACCTAACGGAGGCGCGTATGTTTATTTATATCCTTATATCTTTAAGTATCATTATCCTAACCGTCATAATTAGCGTTCTTTGGCTAATTTCATGGTCAAAAAAGCCTGATGCAGATTACGTTTTAAAATTTATAGCTAAAAATCCGCAAAGATCTTCCTTAATAATTATAAAGAACGGAAAATCGCTCGCAAACGTTAACGCGAATGAACGAAAACCATTAGCTAGCACGGTAAAAATCATGATTGCCATTGAATTTTCCCAACAAGCGGCTAATGGTAGCATAAACCCAGACGAAAAAGTTCATCTTGATGATCTCGCTCGTTTTTACGTATCTCACACTGATGGAGGCGCGCATGAAAAATGGTTAATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 800-168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000039.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_39_length_35410_cov_313.208813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 799 32 100.0 36 ................................ TATTTTTTCAACTTTATTATCATACGAACCATTAAC 731 32 100.0 36 ................................ TAGGAAATGATGGCATGTCTGGTAAAAAATTGTGAT 663 32 100.0 34 ................................ CGTTAGAATAGCATCCATTTTTGATGCGCGTAAA 597 32 100.0 34 ................................ CCAGTAAGGTAACTATAAGAAATTTATCTACTGG 531 32 100.0 34 ................................ GGTTTTTATATTTACAACTATTAAGACATGAGTA 465 32 100.0 34 ................................ TCTCATGCGCAGTTGTACTTGATAGTCTAATTCG 399 32 100.0 35 ................................ AATCTTTTCGCGTGGAGCTGTTTCATCGAAAACAA 332 32 100.0 35 ................................ CGTTGGCTGCTAAAGTTCTTACGAATGTTAATGAT 265 32 100.0 34 ................................ CCGGTTCTGCCTAAATTACCTAGCATAGATCGAA 199 32 96.9 0 .................C.............. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.7 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : GCCCTTTTCCTGTAAGAGCTGGTTATCATCAAGGAATCTTTGAATATACAAAACCATTTCATTAAGCGTTTCTACAAAAATAAAGACAGCATCATGATTTTTGGAAAGCGTGGTCTGTTGCTCAGTAAAAATGTCATAATCTGTTGGTTGGTTAATGATAGCCATATTTGTATATTTTTGCAGGTTTAATTTATCTATGATGGACAATTGGTTACACTCCTTTTTATACCTTGTTTCTTATAGGTGTGATTTAATAAACCACTTATTTTAACTTTATGTTATTATTTACAGAAAGACAAACCTTTATTTTTCATATTAAATTAAAACGTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTTCTTTGTATTTTTCAATAATTTGACATAAAATAGAAGTTATAATCGTATTTTTAGAATAATAAACGGAATAAGGCATATAAAAAATAGTTTTTCTGTAAATATTTAGGTGTAAATCACT # Right flank : TGATTCCTGCCTACCGGCGAGGGAGCCCCCTCAAAGTCGCACCCTGTATAGGTGCTTTTTCGCTGACATCGCACCTTATATATAAGCGCCGCAATCGAGTAGAGGGAAAAGCTAAATAACTTTTCGCCCCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 131648-131287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYU010000004.1 Virgibacillus pantothenticus strain 179-D 7D1 HS NODE_4_length_228808_cov_402.674723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 131647 32 100.0 34 ................................ ACTGGTATCAATACAACACGAACTATCGAGTCAG 131581 32 100.0 33 ................................ AAAAGAATACGTGGGATTGCCAAAAGGAATGTT 131516 32 100.0 35 ................................ CATGCAAGGTGAGCCTGATGCTTTTTCGGACGAGG 131449 32 100.0 33 ................................ TACGCCTGTCGTCACATGCTTCTCTTGGTTCAG 131384 32 100.0 34 ................................ CACTTAAAGCTAATGAGTGTTTTCCATCAAATTG 131318 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGCGAAAAAAATGTTAGTACTAGTTACATATGATGTCAACACATCAAGTAATGGTGGCCGAAAGCGGTTACGTAAAGTGTCGAAAGTATGTCAAAATTATGGGCAGAGAGTGCAGAATTCAGTTTTTGAATGTATTGTAGACGATGCACAGTTCGCTGCTTTAAAAATTCAGCTAACAGGATTAATAGATGAGGAAAAGGATAGCTTACGCTTTTACCGATTAGGAAATAACTACAAAACAAAAGTAGAACATATTGGTACAAAGGAAGCAATTAACTTAGAGGATCCCTTAATTTTTTAGTGCGAACCCCAAGTGCACATGAATTTCCCGGGGGATTCGCACCTTTTAAATGGAATAATATAGGTGGTTTTTTAGGAGGGCTTGCTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAGATTTCGCAAAAATCCATAAAATAGGAGTTTATGAGCAAAAATCGCA # Right flank : TTCAGATTTTGTAACCATAAATCAGGCTAGGAGAATGGTTAGCCTGATTTACATTTGATATTTTTTCTAATGCCTTTATATTTTCTGATTGGCATACTTCCAACCCCTAGGAATAAGGCCATTTTTCTTTTAGCATGTCCATAAATATTGCTACATTTTGTTTACTTTTCATAATAGGTGAGTAAACGCAGGAAAACATTCGTTTGAAATGGATGTCCTTGAGCTGTAATGTGGTGAGCTGCTCTAATTGCACATCTCGTTCTATAACACTATGAGACAATAATGACAGTCCCATTCCCTTAATCACGCTTTCTTTTACTCCCTGATTGCTACTGATCGTGAGAAATGATTTAACTTGTAATCCGTTGGAACGAATCACATGCTCTAAATATTCTCGGGTCCCAGACCCCTCCTCACGGGAAATCCATGATTGATTTTGCAAATCTGAAGTGGTTATCTCTTCTTTTTGAGATAGTTCATGGGAAACAGGTGCAACTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //