Array 1 33545-33180 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHG01000005.1 [Ruminococcus] lactaris strain AM25-1LB AM25-1LB.Scaf5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33544 36 100.0 30 .................................... TGTCGTTTCCTGCTCCTGTCCTTTGCAAGT 33478 36 100.0 30 .................................... AGTATGGCAGCAGATTCTTGACAAGGTGGA 33412 36 100.0 29 .................................... CCATAATTGCATTACCGACTTTTACAGTT 33347 36 100.0 30 .................................... AATACGATCGAGGTGGTAAAGCACCCGATC 33281 36 100.0 30 .................................... GGCAGCGACGAAAGCAAAGTTGTTCGGGTC 33215 36 75.0 0 ......................C....CTTGGGG.A | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AACTGCTCAGCAAACTTTATATGGAATTGGAAAAGCTTACTGCTGACGAACGATTCTATGTGAAAACCCAGGAAATGAAGCAATATCTGCAAGAGTATTTATTACAGCTTGAACAGGAGACAGACTATATCCTTGATCTTGCGGATGAAATAGATTTTGTCTCATTATTTAAAGCTTTTGGAATTAAATATGAGGTGCTGGAAGAAAACTTCTTAGAACGTCTTGTGAGATATATGCGAATAGTGGAACGACTATTAAAGAAAAAGCTTTTTGTATTAGTTAATTTGCGAAGTTATTTATCAAATCAGCAGATTGATGAATTAATAAAAGAAGCGACGTATCAGGAAATTCAGCTTTTATTGATTGAAACCTGTGCGAGAGATTGCATTGAGGGTGTAACAAGGTATATTATAGATAAAGATGGATGTGAAATATAACATCCTAACAGTTTGAGTACCTGTATTTTATGCGAATGATGGTATTTCATTTTTGAATTTGAG # Right flank : ATTGCGAGTATATGTAAAGTAATGGAATATAAAACGATTTGCTTTTACAGGCATGAAAATGGAATATGTCGTGTTAACTGGAAACCAGTAAAAGAAATAATAAAAAAAGAAATATCGCATAATCCATATCTAGGCTATAAAGAACTTGTGACTAAGGATTTATCATTGGATATAGAAACTGAACTGGAGTATTTAATAGAATCAGAACAATTGATAAGAAGAAAATCAGATCATAAAAACCCCAGATATAGATGGGAAGCAAGAATAAAATAATACAAGAGAATACGAATAAATAAGTTCACAGGAGAAAAGTCATGGTTAGAAATATTATAAAGGACAAAAAGATTTTTGGGAGAAAAGCAAAACCGGCAACGGAAGAAGACCAGGAAATCGTAACAGATCTTTTAGATACATTGCGTGCCAATCGAGAAATATGCGTTGGAATGGCGGCAAATATGATCGGCATTAATAAATCGATCATTGCTGTGGCAGTGGGACCA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 82722-83212 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHG01000008.1 [Ruminococcus] lactaris strain AM25-1LB AM25-1LB.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 82722 32 100.0 33 ................................ TTCCTCAACCAATTCAAAATACTTCTCATATTC 82787 32 100.0 35 ................................ AATTGAATATTTAAAATTTTTCAATCTTTGCTCTC 82854 32 100.0 34 ................................ GGAAACAGACAGCCTCAAGGCAAAAGCCGAATCG 82920 32 100.0 33 ................................ TCCAACACAAAGGCGAGAGTGACTATCAGATAC 82985 32 100.0 33 ................................ AACGACATCCTCCGGAATGTTAACGAGCAAAGA 83050 32 100.0 34 ................................ GCCAGTACATCAAGCGTATTGCGGAAGCCTGCCC 83116 32 100.0 33 ................................ CTGATGCAGAACAATATCGTATCAGTCAAAAAA 83181 32 96.9 0 ........................G....... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 99.6 34 GTCACTTCCCTCGCGGAAGTGTGGATTGAAAT # Left flank : ATCCTGTATTTCTGTGGAAATGAGGTGGAAATATGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTGAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACAAAGGTAGAGCATATCGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACTGGGAGACTCGCACCTGTAAAAATAAGCAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTGAAATAATATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGATAGATGTTTTTGTGGAATATTGCA # Right flank : TATTGAGCCGTTCTACATATGGGAATCCAAGGAGTAAAGGCTTTCATCAGAAATACTATAAAGACTTGTTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACTATTTTGCTGAAGAATAGCTTCAATTCAAAAGGTGTTTCGCATTTATTGGGACATGCCAAGAAAATTATATCGGTAGATGTGTATGGAGATACACAGGAAATCATAGAAGACTGTCTGGATGTATTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGCGGAAAGATCAGCAATATGATTATTCAGAAGTGATTGAAATAGACTTAATCCTGGAGGAATATTTCAACGCAGCATGATAAAAAATAGAATAGTAGTAAGAGAGAAAAGTACAAATAAGAATCGAACATTTGTACTTTTTTCTTGCGTTAATCTATATACTTTCAAAAATTTATTTGATATAATAGGGACTGTTACAAGAACAAACAGTAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTCGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //