Array 1 1317-1956 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPBF01000065.1 Escherichia coli strain KG-24 NODE_106_length_2126_cov_4.37719_ID_211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1317 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 1379 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 1440 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 1501 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 1562 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 1623 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1684 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1745 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1806 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1867 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1928 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39547-38236 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPBF01000053.1 Escherichia coli strain KG-24 NODE_24_length_65042_cov_10.1069_ID_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39546 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 39485 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 39424 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 39363 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 39302 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 39241 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 39180 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 39119 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 39058 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 38997 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 38936 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 38874 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 38813 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 38752 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38691 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38630 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38569 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38508 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38447 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38386 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38325 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38264 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //