Array 1 12603-10501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUK010000005.1 Erwinia amylovora strain P-C-3b Ea_P-C-3b_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12602 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 12541 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 12480 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 12419 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 12358 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 12297 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 12236 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 12175 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 12114 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 12053 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 11992 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 11931 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 11870 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 11809 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 11748 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 11687 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 11626 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 11565 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 11504 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 11443 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 11382 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 11321 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 11260 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 11199 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 11138 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 11077 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 11016 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 10955 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 10894 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 10833 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 10772 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 10711 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 10650 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 10589 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 10528 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 457-2012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUK010000009.1 Erwinia amylovora strain P-C-3b Ea_P-C-3b_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 457 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 518 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 579 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 640 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 701 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 762 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 824 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 885 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 946 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 1007 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 1068 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 1129 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 1190 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 1251 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1312 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1373 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1435 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 1496 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 1557 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 1618 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 1679 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 1740 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 1801 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 1862 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 1923 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 1984 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAG # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11476-11804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUK010000009.1 Erwinia amylovora strain P-C-3b Ea_P-C-3b_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11476 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 11536 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 11596 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 11656 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 11716 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 11777 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //