Array 1 64315-65482 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTY01000024.1 Pseudomonas aeruginosa strain CPHL8058 IPC733_24.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 64315 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 64375 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 64435 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 64495 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 64555 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 64615 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 64675 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 64735 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 64795 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 64855 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 64915 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 64975 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 65035 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 65095 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 65155 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 65215 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 65275 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 65335 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 65395 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 65455 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76375-74007 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTY01000024.1 Pseudomonas aeruginosa strain CPHL8058 IPC733_24.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76374 28 100.0 32 ............................ GGCAGCTGATATGTCCTGACACGGGAATCCGC 76314 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 76254 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 76194 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 76134 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 76074 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 76014 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 75954 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 75894 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 75834 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 75774 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 75714 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 75654 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 75594 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 75534 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 75474 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 75414 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 75354 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 75294 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 75234 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 75174 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 75114 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 75054 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 74994 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 74934 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 74874 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 74814 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 74754 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 74694 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 74634 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 74574 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 74514 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 74454 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 74394 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 74334 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 74274 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 74214 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 74154 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 74094 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 74034 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //