Array 1 48534-47654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016393.1 Lactobacillus delbrueckii subsp. bulgaricus strain ND04 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 48533 36 100.0 38 .................................... CCTCGTCAATGTCATATTGAGCACAATACTTGACCATT 48459 36 100.0 40 .................................... GGGGCAGATTTGCCGGCCGTGATTGCGTAATGATTAATAA 48383 36 100.0 35 .................................... TTTTCGGCCGGCGTTTATCTTTTCACAAAACGCCA 48312 36 100.0 49 .................................... TAAAAATTTCTTCTAAAAAATGCATAGTTTCACTTGACATGGCGCAACT 48227 36 100.0 44 .................................... TCTTTGTACTTCTTCTCCTTCCCTAGTTCGATCGCTTCATCGAC 48147 36 100.0 34 .................................... GGTGTATACTCTCCTTAGTTAGTTGTGATTGAGT 48077 36 97.2 44 .....................A.............. CTATCTATCACGCTCGAAAACAGTTGATTAAGCCGTGAGGGTCT 47997 36 100.0 41 .................................... AGAAATGTATTTTTTGTTTACAGCTTCCAAACTCTGATTGT 47920 36 100.0 44 .................................... TCTCCCTTTCGCACTAGTGCGAATTACTTTCCTAAAAAAATATA 47840 36 100.0 43 .................................... AGTGACATAGTCGGTCTGACCATGATCACGCAGTCCACATTGT 47761 36 94.4 35 ............................G..G.... TTTTATTCCTTACAGAGACTCATTCTGCTTTTCAC 47690 35 80.6 0 AT................T..A........-.T..G | G,C [47683,47686] ========== ====== ====== ====== ==================================== ================================================= ================== 12 36 97.7 41 GCTAACAACTTATCTCCGCTAGAAGGAGACGAGAAC # Left flank : TTGAAGTTGCCGACTTTCATTCAAGGGGGAAAATGATGGTACTTCTTTTAAGCTTTGATCTGCCTAGAAATACCAAAGAAGAGCGAAAGAAAGCCGCGGAATACAGGAAACGGCTGGTTGAGTTGGGATTTGACATGAAGCAGTACAGCCTGTATGAACGGGAGGTGGAGTCAGATACTACGAAAGACCATTTGATTGGGATTTTGAAAAAAGAAATTCCAGATGATGGAATGATAATTCTATATCTGTTGCCAGATGAGGTGAATAACAAGCAGATTAACATTTTGGGTCCAGACGCACCAATGAAGGCAGTGTCAGTACCTAAGGTGATCGTGGTGTAGCATCTGGTGTGGTATAATTTATATGTTCTCAATTAGCAGAGGTGCCTTTTTTGTCCAAAAATAGGACAAAGAGAGATGCTGTTTGATGGGCGTTGACCAGGATTTAGACGAGACAAATGCTTGGGGATGCGCGACGTAATAACGTTTTAAACAGGATCT # Right flank : CCAAACGGCCAGTTGCTGGCCGTTTTTTCGTATAAAAAACCTCCTTCATTCCGTCCAAAATGGACTAGACTGAAGAGGTAAACAGAGTAAAGTTTGGCAACCAGTTCCTGGTACATGGCATCGTCAAAATTTTCTTCCGCTTCGCATTCACGCATGTATTCCACTTGGGCCGAACTGAACATTTCTTCTCTTTCCCGGTTGATGTTGACGGTGTACTCATCCAGGTTGTCAATCATGGATTCAATAATAACGGCCTTAAGGTGCTGGCAATACTTTACAGCATATTCTTGTTCCAGTAAGCCGCCCCATGAGTGGCCTAACAGGTAGAAGTCTTCCAAACCGAGCTTCTGGCGGACTTCCTCAAGTTCATCAACAAAGTAGTCAATGTTCAAATACTTACGGTTTTCCTCTTTGGAAAAATCTGGCTGATCTGACCAGTATGAACACAATTGGTCATAAGAGTAGACCTCAACTCCTTTGCCGGCTAAGCCAGCCTTGAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAACAACTTATCTCCGCTAGAAGGAGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 212085-209228 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016393.1 Lactobacillus delbrueckii subsp. bulgaricus strain ND04 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================================================================================================== ================== 212084 36 100.0 30 .................................... TGCAAGAAACAGGATCAAGAAGCAAGACAT 212018 36 100.0 30 .................................... CTGCTTTTGGTGATAAAATGGTCAGCTCGA 211952 36 100.0 30 .................................... TCAAGGTAACATCAATCTGTTTGTTTACAA 211886 36 100.0 30 .................................... ATCTTCAAAACGGCAGGTCACCTGGGGCGA 211820 36 100.0 30 .................................... TAGCGCCAGTACCCGGAGTTTAGCATGACT 211754 36 100.0 30 .................................... GCATGCCGAACCCGTAAGCGCTATAGTTTA 211688 36 100.0 30 .................................... GGGCATTTAGCACCGCCTTTGATCCATCTT 211622 36 100.0 30 .................................... TTTGTTCGATACTGAAGAGTGTAACCAAGC 211556 36 100.0 30 .................................... GCCGCTGGCCTTTGGTCGATAAGGGACGTC 211490 36 100.0 30 .................................... AGTACTACAACAGGTTCGCACCAAGGGATA 211424 36 100.0 30 .................................... AAAAAGCCCGCTCAGGTCAAGAGCGAGCAT 211358 36 97.2 30 ......T............................. TATAAGTGCCAGCCACCAGCTTGTGACTGC 211292 36 100.0 30 .................................... GATAAAGTGTAAAACATTTTTAAGCACTTG 211226 36 100.0 30 .................................... GACTATGCCATTGTTTATGAATGCTTTTGC 211160 36 100.0 31 .................................... TGCATTGCCAGTGATCTGCTTGGCGTGTTTA 211093 36 100.0 30 .................................... CCTGGTCGACCGTGTAGGTCTTGCCTTCGT 211027 36 100.0 30 .................................... CAGAGCGTTACCGTGTTGCTCAGTATATTG 210961 36 100.0 30 .................................... CATCAGCTCGTAATATTTTATTGCTTTTAT 210895 36 100.0 30 .................................... TTTTACTCCAGATAGTGTATCTACGTTACT 210829 36 100.0 30 .................................... AAGCAATTCTAGCAAGTTTTCCAAATCGTC 210763 36 100.0 30 .................................... TGCTGCTGCTTAAGTGATTGCTGCTGCTGC 210697 36 100.0 30 .................................... GCCAATCCCGACCTCAGCTTCCTCGACGCC 210631 36 100.0 30 .................................... ATACGTTGGATGGAAAAGCCGTCCGACGGG 210565 36 100.0 30 .................................... TGGCTCTTTAGTCCGTTTGGCTGCATAGTC 210499 36 100.0 30 .................................... TGAGAAAACTATATCTTGGAAACGGCGACA 210433 36 100.0 30 .................................... AGCTCCAAACTGACATTTACAACGCCATCA 210367 36 100.0 30 .................................... TTCCAGCCGGATTCTGCGCTAATGATATAG 210301 36 100.0 30 .................................... AATGACGTGATTCACGTTAAACATGTCGTA 210235 36 100.0 30 .................................... CATCAAACCGGAGAGCTTTTACTTCCTGGT 210169 36 100.0 30 .................................... GCAAGCATCTGCGGAACTGGGCAAGCTCAG 210103 36 97.2 30 A................................... TCAACTGAAGTTAGCTGACCACCAAGCCTT 210037 36 100.0 30 .................................... ATTGGCTTTTACGTCAGCATCCAGGTCGTG 209971 36 100.0 30 .................................... CTACCTTTTCAATTTCACGTTCACGTTCTT 209905 36 100.0 30 .................................... TGGGCCTTCTGTGACTGCTTAACCTGCTGG 209839 36 100.0 30 .................................... AGAGCTATCAGCAGCTTAGATTCCAAGATG 209773 36 100.0 30 .................................... CCTCCTACAGTGCTTTAGCCGCCTGGCGAC 209707 36 100.0 30 .................................... TCTAGCGCCTACGAGGTCGCACAAGGCGCT 209641 36 100.0 31 .................................... CCGACTACCAAATTGTATACCTCTACCGCAT 209574 36 100.0 30 .................................... GCAACGTCAAGCACAATCAGCAGCACGACT 209508 36 100.0 30 .................................... GCTGACTGAAGAGCCAAAGCGGGCAAAGTG 209442 36 97.2 143 ...................................G TTGCTTGGATGCGTGGATTGAAATAGTTTTATAGGGGTGCTTATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGTAGGTGGGGGTGATC 209263 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== =============================================================================================================================================== ================== 42 36 99.2 33 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACTTTCTATCGCAATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTTAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATAGTATAATCGAGACGGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTATAGAAATATCTAAGCTGTGCTTAGAGCTAAAAAAGTCTATCATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAGGACCTTGTTGATTGGTACTAGCCTTATATTAAAGCTGTGTTAAAAAATAACG # Right flank : TGCTTTTCATGATTGAGAAGCACTTTTTTCTGTTGAACACAACAACTTAAAAAAACGTTAAATCAAACGCTTCACCAAGTAAGCAGGAAAAGATTATAGTAAAATACACTGGTTATAAAAAAGTTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTAAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCTGCTATCGACCTGGGCCAAATCGCCCTGCGCGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAGAACATGGCACGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGTGGCTCCAGCCTCAAGGCTGCCCGGCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 1851168-1851822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016393.1 Lactobacillus delbrueckii subsp. bulgaricus strain ND04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 1851168 36 100.0 44 .................................... AATCAAACAACTGTTCTAAATCTTGGATCAAGCTGTATCCGGTT 1851248 36 100.0 40 .................................... GTATTTAGTTGTCAAGGTGCTATTTTTTGAAAGTCTCTTC 1851324 36 100.0 40 .................................... GGGGCAGATTTGCCGGCCGTGATTGCGTAATGATTAATAA 1851400 36 100.0 35 .................................... TTTTCGGCCGGCGTTTATCTTTTCACAAAACGCCA 1851471 36 100.0 49 .................................... TAAAAATTTCTTCTAAAAAATGCATAGTTTCACTTGACATGGCGCAACT 1851556 36 100.0 44 .................................... TCTCCCTTTCGCACTAGTGCGAATTACTTTCCTAAAAAAATATA 1851636 36 100.0 43 .................................... AGTGACATAGTCGGTCTGACCATGATCACGCAGTCCACATTGT 1851715 36 94.4 35 ............................G..G.... TTTTATTCCTTACAGAGACTCATTCTGCTTTTCAC 1851786 35 80.6 0 AT................T..A........-.T..G | C,G [1851788,1851791] ========== ====== ====== ====== ==================================== ================================================= ================== 9 36 97.2 41 GCTAACAACTTATCTCCGCTAGAAGGAGACGAGAAC # Left flank : TTGAAGTTGCCGACTTTCATTCAAGGAGGAAAATGATGGTACTTCTTTTAAGCTTTGATCTGCCTAGAAATACCAAAGAAGAGCGAAAGAAAGCCGCGGAATACAGGAAACGGCTGGTTGAGTTGGGATTTGACATGAAGCAGTACAGCCTGTATGAACGGGAGGTGGAGTCAGATACTACGAAAGACCATTTGATTGGGATTTTGAAAAAAGAAATTCCAGATGATGGAATGATAATTCTATATCTGTTGCCAGATGAGGTGAATAACAAGCAGATTAACATTTTGGGTCCAGACGCACCAATGAAGGCAGTGTCAGTACCTAAGGTGATCGTGGTGTAGCATCTGGTGTGGTATAATTTATATGTTCTCAATTAGCAGAGGTGCCTTTTTTGTCCAAAAATAGGACAAAGAGGGATGCTGTTTGATGGGCGTTGACCAGGATTTAGACGAGACAAATGCTTGGGGATGCGCGACGTAATAACGTTTTAAACAGGATCT # Right flank : GCCAAACGGCCAGTTGCTGGCCGTTTTTTCGTATAAAAAACCTCCTTCATTCCGTCCAAAATGGACTAGACTGAAGAGGTAAACAGAGTAAAGTTTGGCAACCAGTTCCTGGTACATGGCATCGTCAAAATTTTCTTCCGCTTCGCATTCACGCATGTATTCCACTTGGGCCGAACTGAACATTTCTTCTCTTTCCCGGTTGATGTTGACGGTGTACTCATCCAGGTTGTCAATCATGGATTCAATAATAACGGCCTTAAGGTGCTGGCAATACTTTACAGCATATTCTTGTTCCAGTAAGCCGCCCCATGAGTGGCCTAACAGGTAGAAGTCTTCCAAACCGAGCTTCTGGCGGACTTCCTCAAGTTCATCAACAAAGTAGTCAATGTTCAAATACTTACGGTTTTCCTCTTTGGAAAAATCTGGCTGATCTGACCAGTATGAACACAATTGGTCATAAGAGTAGACCTCAACTCCTTTGCCGGCTAAGCCAGCCTTGA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAACAACTTATCTCCGCTAGAAGGAGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //