Array 1 1494-2254 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JHXC01000022.1 Megasphaera elsdenii T81 T505DRAFT_scaffold00019.19_C, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                    	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	===================================	=========================================	==================
      1494	    35	 100.0	    35	...................................	TTCCTCGTTCTTCTTTTGATTCTACCCGTGAAATT      	
      1564	    35	 100.0	    41	...................................	ATGGCGATATTCTTTCTCATTATCAATATCCCCAATCCAAT	
      1640	    35	 100.0	    40	...................................	TATATTTAGCTCCTTTTTTTGTAACCCATTCTTCGGCAGC 	
      1715	    35	 100.0	    37	...................................	AAGTAGCATGTTTCACAACGTTCTACTTCTTTTCTTT    	
      1787	    35	 100.0	    37	...................................	ATTTTCCCGATTGGGTAGTCTCTAAGTTGTCCGACCT    	
      1859	    35	 100.0	    39	...................................	TCCTGTCAGGTCTCTTGTCTTCATGTATTCCATGTAAGA  	
      1933	    35	 100.0	    36	...................................	TTGGTCGTAAAAATTTCAAACATCTTCGTTTCTTCA     	
      2004	    35	 100.0	    33	...................................	AGATATTCTTTATCGTCGATCAGATATCTTTCT        	
      2072	    35	 100.0	    40	...................................	TTTTATTTGAATTTATAACGTACCCAGTCAGGGACGTCTT 	
      2147	    35	 100.0	    38	...................................	TGTCGTCCGGGAGCCCTTCGATGTGACCCAGCGTCTGC   	
      2220	    35	 100.0	     0	...................................	|                                        	
==========	======	======	======	===================================	=========================================	==================
        11	    35	 100.0	    38	GTGTTAATGGCCTTACCCCAACAGGGGACGGAAAC	                                         	       

# Left flank :   ACGTATGATACTTGGTGATTTTTTATATCATGCACAACATGGGTGGTACGTATTCCAGTCGGTCTATGAGAATGGCTGGAATAGCGGATCCTGGCTGGTGCAAGGATTATTGATTTTTGTAAGTCTTAGCTTCTTAGGGACGACTGTTGGGGTCCTCTTTCCCCAACAGGTTCAATCTGAGAAACAGCATCTTTGGCGACAGGTTGTTGTTAACGTAATCGTAAATTGTTCTATTATTTTTGGTATGGCTAGCATTTACGGGCTATAAGTGAGAAGAAAAATGATAGGGAAAAGTCAGCTCAAGTCTGTTGGGCTGGCTTTTTTACGGCCATCATGATATAATAAAAACAGCTTAGAAGGAGGCAAATCTGCCCCGCTAAGATGGTTGTGCAGGATACAAGCGATTATGAGAACATTCTCACGGCCATTAACCGAAAAAAGACGACTCCCCCGCAAACCGACTTATCAGGCCAGTAAACAAGCGGCTTCCCAAGGACGCT
# Right flank :  CAAGGAGGTGACAATAATGGGGGATATTATTGTTTTAGGTTAATGAAAACGGTGGGCTAGGGGAGATTCTCCTGGCCTATTCGTCTTTACAGGACGTCCCCTGCGAAATCGCATATAGGCGATGGAACAAAAAAGAACTGCCGCATGATTTTAAAATTCATGCGGCAGTTCTTTTTTTATGCCAAAATTGGCAATATATATAGGATGTATATATTAGGAGGAGATATGATAATGGAGAAAGATATTTTGATTGATAGCTTGCAAGGGCAGCAAGCTATCCAGTTTATTCATGATTGTTTTAGTAAAATTGGACTTTCATGGGAACAATGTCAGCTTACGAAGGAAGAAATTACGCAATGTTGTGACCATCGTGATGAACAAGGTCATTTATTACTTGAAAAAGAAGATCCTCATGATGGATTTGCTGTCTGCCCGAAATGTAAAACTATGATTGTCATGGACTTTGATGAAAACCAGCTAAGGTATGACTTGAAGGATAT

# Questionable array : NO	 Score: 3.26
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTAATGGCCTTACCCCAACAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [10,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-6.90,-7.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.37,0.27   Confidence: LOW] 

# Array family : NA
//