Array 1 267683-269053 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNTE01000002.1 Escherichia coli strain MOD1-EC6674 MOD1-EC6674_2_length_379960_cov_43.0055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 267683 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 267744 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 267805 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 267866 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 267927 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 267988 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 268049 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 268110 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 268171 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 268232 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 268293 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 268354 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 268415 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 268476 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 268537 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 268598 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 268659 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 268720 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 268781 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 268842 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 268903 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 268964 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 269025 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTATTCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284555-285558 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNTE01000002.1 Escherichia coli strain MOD1-EC6674 MOD1-EC6674_2_length_379960_cov_43.0055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284555 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 284616 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 284677 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 284738 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 284799 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 284860 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 284921 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 284982 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 285043 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 285104 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 285165 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 285226 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 285287 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 285348 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 285408 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 285469 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 285530 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //