Array 1 157950-157502 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEPKF010000005.1 Salmonella enterica subsp. enterica serovar Typhi strain 1115 NODE_5_length_245014_cov_17.299269, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    157949	    29	 100.0	     0	.............................	-                               	Deletion [157921]
    157920	    26	  86.2	     0	---A.........................	-                               	Deletion [157895]
    157894	    26	  86.2	    32	---A.........................	ATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA	
    157836	    29	  96.6	    32	...........A.................	TAAAACTATAACCAACATTAATCTTTTTTAAT	
    157775	    29	 100.0	    32	.............................	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT	
    157714	    29	 100.0	    32	.............................	GCGGTAAAAATCACGGTCGGCATACATCGTGG	
    157653	    29	 100.0	    32	.............................	CAATTCACGCGGCGGCGATTGGCGATTCGCGT	
    157592	    29	 100.0	    32	.............................	ATCTGTCTGATATCCGACACGGGTTGCTGTCC	
    157531	    29	 100.0	     0	.............................	|                               	A [157504]
==========	======	======	======	=============================	================================	==================
         9	    29	  96.6	    24	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACACCCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA
# Right flank :  TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCCCCAACAATCAGGTTATTGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 5.32
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.76, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.30,-1.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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