Array 1 487399-487547 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJR01000003.1 Cronobacter sakazakii strain cro14 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 487399 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 487459 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 487520 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 823084-822017 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJR01000002.1 Cronobacter sakazakii strain cro14 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 823083 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 823022 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 822961 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 822900 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 822839 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 822778 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 822717 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 822656 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 822595 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 822534 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 822473 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 822412 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 822351 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 822290 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 822229 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 822167 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 822106 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 822045 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 852232-849520 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJR01000002.1 Cronobacter sakazakii strain cro14 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 852231 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 852170 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 852109 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 852048 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 851987 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 851926 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 851865 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 851804 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 851743 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 851682 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 851621 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 851560 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 851499 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 851438 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 851377 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 851316 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 851255 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 851194 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 851133 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 851072 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 851011 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 850950 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 850889 29 100.0 31 ............................. GCTCATATTTTTAAAATTTTTAATATCTAAC 850829 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 850768 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 850707 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 850646 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 850585 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 850524 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 850463 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 850402 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 850341 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 850280 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 850219 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 850158 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 850097 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 850036 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 849975 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 849914 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 849853 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 849792 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 849731 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 849670 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 849609 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 849548 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //