Array 1 299527-300837 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEME01000003.1 Escherichia coli strain KCRI-21 isolate RDK36_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 299527 29 100.0 32 ............................. TGCCAGGAGTGTTTTGATAAATATATTAGAGA 299588 29 100.0 32 ............................. GCTTCCTCCGGAGTAGTGGCAATCACATCAAA 299649 29 100.0 32 ............................. TGATTTATCTGGAAGACTTTACTACTAACAGT 299710 29 100.0 32 ............................. GTGGTAAGAAGTGGATCTTTAACATCATCGGT 299771 29 100.0 32 ............................. CCTGGCTACGGCAGGCGTTAATTAATAATCCG 299832 29 100.0 32 ............................. CAATTTTGGCAAGTTGCGATACCCAGGAACAA 299893 29 100.0 32 ............................. AATGCGTGTCTGCCGCTGCTGAGTTTTGCTGG 299954 29 100.0 33 ............................. CATTCATTACCGAAAATGATATAGGTCAATGAA 300016 29 100.0 32 ............................. ATCCGCAACAGTGATGTAACGCTGATTACTGA 300077 29 100.0 32 ............................. GAAATTTCGGAAATTAAATCCGCTCGCGATCG 300138 29 100.0 32 ............................. ACGGTCCACGGCTCACAGGATCCGTGTGTAAA 300199 29 100.0 32 ............................. AGCATCTTCAATAGTGATTTTGATACCCTCGG 300260 29 100.0 32 ............................. TATTAAATGTTAAATATTCCGACCCGCCTCAC 300321 29 100.0 32 ............................. CCCCCAACGACTAAACGCAGCCTCGATTGCCA 300382 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 300443 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 300504 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 300565 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 300626 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 300687 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 300748 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 300809 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATATAAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 326539-329070 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEME01000003.1 Escherichia coli strain KCRI-21 isolate RDK36_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 326539 29 100.0 32 ............................. ACCAGATCGCACTGACTGATAATGGTGAACAA 326600 29 100.0 32 ............................. TTTACGCCTATTTTTGCATAAGGTGAGCCAGC 326661 29 100.0 32 ............................. CTCGGGCTGCACATTGACAACGTAGATCCGCC 326722 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCTGTCA 326783 29 100.0 32 ............................. TCGAGACTAGCAACACGATTCGATGCGGTGAG 326844 29 100.0 32 ............................. CGTCTGCTTTCGTTGGTGTGGTTGTCCGTGCA 326905 29 100.0 32 ............................. CGCGCGGGCAGCTCCCTCCGCTCCCTCCTGCG 326966 29 100.0 32 ............................. ACACACCAAAATATTCTGGTGTTTGTTAAGGG 327027 29 100.0 33 ............................. AAATCCAAAAAACTGGGGTATGGTGGCGTGTGG 327089 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 327150 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 327211 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 327272 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 327333 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 327394 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 327455 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 327516 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 327577 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 327638 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 327699 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 327760 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 327821 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 327883 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 327944 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 328005 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 328066 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 328127 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 328188 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 328249 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 328310 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 328371 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 328432 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 328493 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 328554 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 328615 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 328676 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 328737 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 328798 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 328859 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 328920 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 328981 29 96.6 32 ............A................ CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 329042 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //