Array 1 26689-25333 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSWK01000018.1 Neisseria meningitidis strain M02678 M02678_HUY3007A35_cleaned_ctg_29976, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26688 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 26622 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 26556 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 26490 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 26424 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 26358 36 100.0 30 .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 26292 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 26226 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 26160 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 26094 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 26028 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 25962 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 25896 36 100.0 30 .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 25830 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 25764 36 100.0 30 .................................... GGGTAGCCAGTGCTAAAACCGCACCCGCTT 25698 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 25632 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 25566 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 25500 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 25434 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 25368 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //