Array 1 155957-155499 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUBB01000003.1 Lactiplantibacillus pentosus strain DZ35 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 155956 29 96.6 33 ............................C GCTTGTCTTGCGTGTAAAGCCGGTCGGCTTTCA 155894 29 100.0 32 ............................. ACGATTAAATGCCGGCTTATCTAGTGACATGA 155833 29 100.0 32 ............................. TACGGCTGCCGACTTCGACGGCGTTCATACGG 155772 29 96.6 32 ............................C ACATAGATACACGTATATTTTGTGCCAAATTA 155711 29 100.0 32 ............................. TCTCCTCAGCACGTCTGATAGCTTCCCTTTCA 155650 29 100.0 32 ............................. TTCTACACGCCTTATTGTAGCTATTGCCACTT 155589 29 100.0 32 ............................. CAGTCACGATTGTTGTAAACTGGCCACCTTCA 155528 29 93.1 0 T.................A.......... | T [155502] ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : TTGGTTCATCACGCTAAAGTTATCCGAATCACTGGTCGATCATATCGAATGAAAGATCATTTAATTGAAAAGAAGGATAATTCCGGACCTGATTTATCAGGTTTCAACGCACAAAATAAAGAAAGGAGCAGTGAGACACTGTAAACTTTATCGGTAAAAAACAGCATTTTTTAATCGGCAAAAAACGACATTTTCACATCGGCGTTGACACCAGACACTACAACCTATTAACACTATCACCTGAACGAGCAACATCATATGATTAATTGGAGTACTTGGTGGCCGAGATTATTTTACAGCATATGACATCTCACACGGCCATTATCAAATTTAGTATCTAGCGTCATTCTGAGCTTCTTCAAATATTACTGCGTCCCAATGGCAAACTATTGATTTTATTTGGAACATACCTTATAGTCAGAACACTAGCACTTCGACAAGTTGACCCAAAACAGTCATTTTTATATTTTAGATTGGTGATTTACCGGCATTTTTTTAGT # Right flank : AAACTCGATGGTTCCTCAACGACTGCCTTGTTCTCCGCACATGCAGTGTTGCACCGGGCCAGTGCCATTGTTCAATACCAAATATTTTGTTCAAAAAAAGACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAATTAAGTCTTAAATTAAGCAAGTGCCTTTTTAGCAGTGTCAACTAATGCTTTGAATGCATCCGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCCGCGTTAATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAGTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 170628-170840 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUBB01000003.1 Lactiplantibacillus pentosus strain DZ35 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 170628 29 96.6 32 ........T.................... AAATTGCCTATATGATCACGCTTGATGTCCCG 170689 29 96.6 32 ............................T TTTAAGCGGGTTAAACATTGCCCGAGCTCGTG 170750 29 100.0 33 ............................. GCCGTCCAGGACAAAGAAAAGGCCAGCAATTCG 170812 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 97.4 33 GTATTCCCCGTGTATACGGGGGTGATCCC # Left flank : GCATCCAAAGGGACGGGTTGTGCCACATGTGACCATTGAACAACAGAAAAAATGGCTAGAAGACCGTGCGGCACGAGCTGGATTTGAGTTGATTCGTCGTAGCAATGTAGAATCTGATACAATTCACAAGTTAGCATTTGATGTTGTAAGCCATGATTGGCCAGTGCTTCACCACCATACAGAAACTAGCGTTCGCATGAGCCGTGTTACGTTTGAAGGACTCTTACGCGTCAAAGACGTAACGGCCCTCAAGCGAACCTTGACGATGGGGATTGGCCGTGAAAGAGCATTTGGTATGGGCTTAATGACGGTTATTCCTGAAGCACAATGATTAGGATAGGCTCGAGTTGGTGAGTCGTGGGTACGATATGATGTTTGCTGGGGTTGTCAGTGGGAGGCTGGTTTGATAGCGATACGCTACTGACTGTGTTAGAAACCAAGTTAACTAAAAACTGCCATGTGGTGTTTTCAGAAAGGCTTAGAGACGGGATTTATTAAGT # Right flank : CCATAACGCAGGCCAATTTTCACATTCATCACAGCTCAAAAAGCGAGCCCCCAACCAAGGGACTCGCTTTTCTATCACTCATAATACTATTCCGTATGATGTTTCCGCACCGGGCTGACCCAAGTTCCGCTACCGTAACCAAGAATCGTTTTAACGGCTGGAATCAGTGTTGTCACTAGGGCGAGTGCGTTGACTTGCCAGTAGATCAGCATGTATAGCGGCATAAAAATCAAGTATTTGAATTTACGACCGCGGTCATCGACAATCAGGGCTGACAGTAGCTGCAAGACGCCGGCAAACATCTCGAAAGTCACGAAGATGAAGGCCATGCAGAACATGTGGTAAACCCGTTCGTAGTTGCCCGTAAAGAAGAAAGTGACGAATGAAATTAAGAAAATCAGTGTTGAGACAAAGAAGAATAGGGACCAGATAATACTCAAGGTTTGGTCAGTAATGAACGCCCATTGCTTGAGGTACTTGCCAGGGTGGCTTGCGACCCG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGTATACGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 410650-410416 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUBB01000001.1 Lactiplantibacillus pentosus strain DZ35 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 410649 36 100.0 30 .................................... TTTTATCATGTCAACCGAGTATATCAATGA 410583 36 100.0 30 .................................... TAATCCCGACCAAATTAACAAGGGAAATAA 410517 36 100.0 30 .................................... GAGGTGATGGAGGGGTCAAGGGGGTCTGGG 410451 36 97.2 0 ..........................A......... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCATGGATTTAACGCACAACCCTAGTGCAGTTTTAGAGGCACTTGTTCAAACTCATGTTGAGTTAGGACTCAAGCAATGCCCTGTGATGACCAATGTTAGCCACTATTTGAACTCGCAACAATGGGCCGCTTTTGAACAGCAAGTGGCGGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : AGAATCGTTTCGACCTGTCATCCGGGTCGCCGACAGTGGTAATTTTAAGTAGTTGTAGAATAACCCCCGTGTTACTGTACATCTTGAATAGTAGTCACTACCCCTTAACCTCCAAGCCCACCAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTTGGC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 85609-86124 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUBB01000002.1 Lactiplantibacillus pentosus strain DZ35 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85609 28 100.0 33 ............................ CTGTAATCCCGACAGGTTTACCGCCAGAATACA 85670 28 100.0 33 ............................ TACCACCGACATTGGTTGACTCCTTAATAATGT 85731 28 100.0 33 ............................ CACGTAGTCATAGAGTATCTCGCCCGACGAATA 85792 28 100.0 33 ............................ TTTTAATCTATTAGCTGCATATAGAAACTAGCA 85853 28 100.0 33 ............................ TCAGATTGCGGCCGACGCTGGTCTGATGGTGCA 85914 28 96.4 33 ..........T................. TATATGGGTCGACACTTGTCCTAATTCGCATGA 85975 28 96.4 33 ..........T................. CAACGGTATCACATACGTTAAAGATACGCCATT 86036 28 96.4 33 ..........T................. CAATTGGGATAAAAACGCTGATACGATTTTAAA 86097 28 92.9 0 .................A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : CGTCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGGATTTTTGGCGAAATTGCCACTGTTTGATGGAAACAACTCAGAATAATATAACTAGTAGTAGTGAACCACGCCGCAGAAAGGGATTTAACGGATGATTTTATAGCCATTCTTCGCTTTATCAGTATTATATGACCATTTAGACCGGTTAATTGTAAATTCGTTTATACGGCAATTTTGAGCCGAATTCAAGCGATTCGCGAAATCTTGAGGAGCAATCATCTTTCAAGGGCGACAGCAAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAACAAAGCCTAAAGTAAGAAAAAGTAACACGCAAATCACTCCAAATTTCTTACGCATTGAAATATTTAGTAAGCGGCTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAATCACATCGCAATGGAAAATGCAGATGTGGTCTTTCTGATTGTTCGATAGTTTTTTGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAATACATCTTCAGTCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGCATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTGAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATACTCGCTCCAATATACTTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472541-472173 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUBB01000002.1 Lactiplantibacillus pentosus strain DZ35 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 472540 36 97.2 30 .......................G............ CATTGCCTGGTAAAGAGGGCCGTGGTTTTA 472474 36 100.0 30 .................................... CTCAGACGACGCCTTTAGATTGCCCAGGTA 472408 36 100.0 30 .................................... AGAATCATTTGGTTATGTCAGTGTGATTGT 472342 36 100.0 30 .................................... CCAGAGGTCTACCGACTTCTGTCAGAGGTT 472276 36 100.0 30 .................................... CAAGATGAATTAGAACAGGACCGACTGGCG 472210 36 80.6 0 ................GG.........AC....GTT | AC [472184] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.3 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGAACCATTGAAGTTAATCAATATTTGACTAAGTTGGAACGACTGATTAGTGAGTCGTTAGCCGATGAAGATCGTAATCAGATTCATGATAGTTTGAGTAACTTATATTCAACTGTTCAACAACAACTTTTCTTAACGGACCTGCCACTGGAGGTAACTTACGATTTCGATATGAAGCACTTATTGAAATTTGCAAAAATTCATTTCGATGAGAAGTGGCAGACTAATCCTTATGATATAATTTAGTCAGTCCTAAAGGTTCATCAAGAGTGCGGTATTGAATCATGCGTGGTGTTGACCAACGTTGCGCACTATTTGACCGTCTCAGAAATGCAAGAACTTAAAAATAGCGTGCCAATGACCGGACAATCATTGTTACTGCTGGAGTTCTGCGTGATGAATCAACGTGATTATTATGATGTCGGGACATTTAATTATATTGATGAGGACTTTGTTGATTGGTACTGATGAAATGTTAGATTTCGATTAGAAATTAACG # Right flank : AGTCTGCCACGTATGTTGTTACCATCGTTTAAAATATCATTATAGGTCGTTAACTATGTGAGGATTCTGATTTGTCGTAGTCAATTTAAAAAGAATCTGTATTTTGAGAATGAGAGCTCAGCTGTCATACTAAACATGCGAGGCGTTCACCACCGTCCACTAATCCACAATAATCTTCCGCACCCCACAAAACGCAACGTCCTGCTGGTCACCAAACTGCCGCATGACCTCGCCGTGTGTCACGCAAGCGATACAATCATATGTTTGAGCGTACTTACTCAGAGTTGTGAGCACTCGCGACTTAACTTCAGCGGCTGTCTCATAGTGCAGAGGACTGTCTGCAACTCGTTGGCCAGCATGTTGTCGATAAATCTGATAGGCCACGCTAGCTTGTTCGTCGGTGTCAGTTCGTGAACCGGTATTATCAGGTTGCCACTCGCGCAGTCCGAGCTCAACTTTTAATGGAATATCGTTAAACCGCACGATTTCTAGTGCCGTCT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //