Array 1 168722-168170 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGL01000013.1 Streptomyces incarnatus strain DE0106 NODE_13_length_195391_cov_25.656721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 168721 36 81.1 36 CAC..C.A.-.....A..................... CCGAAGTCCGCCGAGGGCGCCGTGGCGATGATGGTG 168649 37 97.3 36 ........................T............ CAGTGGACCTGGAGCGCGGGCCCGTCCGGTACGCCG 168576 37 86.5 37 .....A..............A.G.T.G.......... GCCTTCTCCAGCTCGGCCGTGAGCTGGGCGAGGCGTT 168502 37 91.9 38 .....A.........G........T............ ATCTGCTCCCAGACGTTTCCGCGGCGACCGCGGAGCGT 168427 37 94.6 37 .....A.................A............. CTCGACGGGGCGGGGAAGGGCGAATTCAACCTGCCGA 168353 37 97.3 37 ....................T................ GATGTCAAGGCGCAGCCACCGCACCGCCGTGTCGGGG 168279 37 94.6 36 ...............A......G.............. GAAGAGGACACCGAGTCCGTCAGCGACGACGGCGAC 168206 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 92.9 37 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : TTCGAGCACGACCGTGCCGCGGCTCGCGCCGGCCTCGCACTTCGCGGCCTCTACGTCTTCACCCACGCGGACGCCTTCGGCAGCGTCCCTTCGCATGAGCTCATCGACCGGATCACCGTGAAGCCCCTCGGCGAGGCCACCGCCCGCAGCTTCGCCGACTACGGGAGCGTCGACGTGAGGGACGCCGACCTGCCGGACGGCATCACCATCACGAAGCTCGTCGGGTGACCGCGCCCCACCCGCCGGCGAGAGGAGAAGGAGAGCTCACCCAGGTCTCCCTCTCCTCTCTCGAGCACTACGCCTACTGCGCCCGCCAAGCAGGGCTGATTCTGCTGGAACAGACGTGGACCGACGACGCCGCCACCGTCCGCGGCACCCTCCTCCACCAGCGCGTCGACACACCCGGAAACCACGGCCGTGGCACCGTCCGCACCCTCCACGCACTGCCCGTGTGGCACGACGACCACGGTCTGACGGGCGTCTGCGACACCGTCGAACTC # Right flank : GGCCTGGACTGGACCGCGGACCGGCAGGCCGTCGTCAAGCGCGCTCCAGGCGCTGGGGTACCCGCCGCAGTGAGCGGAGTGGTAAGCGCGCAGACAGAGGCGGTACACCCGCAATCGCATCACCAGCGCTCCACCAGCCAGGGATTCGCCGTGCACTTTACGACCGAACGAACCCTCGCCGAGACGGGAGTGCGCAGTTGGCTCAGTGATTAGCGGCAGCGGCTGGGTAGAGTCCGTCGGCCAGGCGTCGGGGAGTGTGCCGCCAGCCGTATGACCGCAGCATTCACCCCTCCGGGTAAGGAATGCGGGTGGATGGATCAGGCGAGATCAAGAAACCTCTTTTGCTCCACCGGGCGCATTTCGTGAGCGCGGTTGGCATGTGAGTGGGTAGAGGAATTGCGCTGCTCATCGAGCCAGGCGTGCACGTCTCGCATCGGATAGCGGACGGCGCCGCCGTCGAGCTTGATGTAAGTCGGTCCCTTGCCATCATTTCGCCAGTT # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1773-2254 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGL01000058.1 Streptomyces incarnatus strain DE0106 NODE_58_length_4264_cov_26.898596, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1773 29 100.0 34 ............................. TTGTGCTGATACGAGAGTCCCGCACCTCGTGGAC 1836 29 100.0 36 ............................. CGCCGGGGCCGCCCCTGCGGGGCAATGGAATTCCAG 1901 29 100.0 36 ............................. GTGGGCTCGTCTGTGAACGGGCGGTCGTTCTGGGGC 1966 29 100.0 34 ............................. ACCGGTACCCCTTACGAGCCGTCCTGGTCACCAC 2029 29 100.0 39 ............................. AGCCGATCCGTCCGAGGCCGGCCTCCTCCTGGAAGACCG 2097 29 93.1 36 ..................A....T..... CCGTGGGATTACCGGCCGCCGACGACGCAAGGGCCG 2162 29 86.2 35 .....C.....G............CT... CCGATCCCCGGCACCATGCGGAAGTTCACCGCCGA 2226 29 93.1 0 .....C..T.................... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 96.6 36 GCCGTTATCCGCCCTGGAGGGTTCGCAAC # Left flank : GCCTGGAGAACACACCCTACAAGCCGTTCCGCCCTTGGTGGTGACTGACCATTTTCGTCATCCTCGTCTACGACACGGCAGCCGAACGCAACCCGAAGGTCCTCAAGACCTGCCGCAAATACCTTCACTGGACCCAACGCAGCGTCTTCCAAGGCGAACTCTCCGATGCCCAGTACCGCGCGCTCACGTCTGCCCTCGCTGCCGCCATCGATCCGACCTACGACAGCATCGTCACCTACACCGCTCGCTCGGCCGACCTCGTCGCGACATCCACCCTGGGGATCTCTCTCGCCGGCCCCGGCGATATTCTCTGACGGGTTTCGCGATCCGCCCTCGCTCAGCGCATAGGGCAAACATGCTCTATGCGGCGCGTATAGGAAAACGTGCTTCCGATGCCTGGTAGCTGGCTTGATCTGCGTGTATGTATCACCGGCGAGTCGCTGCTGAGTCTGCGCAGCCGAGGACCGGAGCCTACCTCTGAGCAGGCGTTTTACGCTCGG # Right flank : CGTCATCGCCCAATCGTCGTCAAGGGTGCGGAACGCGAAGTCAGCATCAGCCCCGGAGCGTTCGCAATGCCAGCATCCCCCGGATCATGTCCATGGTCTGCTCTGTCGCTGTCATCCGCCCTGGGGGGGGCAACTCGCCCAGATCCAGCAGACGCAGGTCGCTGCTCGGGGCCGTACGGTGCCCACAAGATCACCGAGCTACTCAAGGCAGCTCTCCCGAGCGGCAGCGCGCTGGTCATCAGAGATCTCACGGCAGAGTTCGCTCCAGAAGAAACGGCCCAGGCTACCCAGATTTATACGGCAGCAGGAACTCCGACGAGCCCGCGATCGTGACGACTTCAGGGACTTCTTCGATGGCTGGAAGCTTGTCGATCCCGGCATCGTCCCTACCCCCACTATGACGGCTCCGTGGATGAAGTCATCACCGATCGCGAAGCATCCTGCTACGGGGCAGTAGCCATCTCTCCCTGACTCGTATTCCCCATTCTGTCAGCTGGGCC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTTATCCGCCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3678-1899 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGL01000053.1 Streptomyces incarnatus strain DE0106 NODE_53_length_6098_cov_26.693289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3677 29 96.6 36 .............T............... GCAGGGCCCGGTGGCCGACTGGGGCCAGCGTGACGG 3612 29 93.1 37 .C................T.......... GCGCCCACATCGTCGGCGCCATGGTCTCCGAGTCCTC 3546 28 93.1 37 ..................-.....G.... GTGGACCGTTACTTGCGGGAGGCCCGGCAGGCGCAGG 3481 29 96.6 35 ...................A......... GACCTGCTCGACCCGCACACCGGGCTCGGACTGCC 3417 29 86.2 35 ....T............A.A.......G. CAGCAGACCATGCGCGAGCAGATCGGCCACCTCCT 3353 29 93.1 27 .A.................A......... CGGGCACTCCTGGGCCTAGACCTGCAA Deletion [3298] 3297 29 86.2 35 .....TT..T.........A......... TCGCCGAGATCCCAGTCCGGGCCGCGGTAGATGTA 3233 29 86.2 37 .......T....T..A...G......... CCGGCATTGCCACGCACATGCTGATCGGCTCCATCCG 3167 29 96.6 37 ...A......................... CCGCCATCACCGCCAAGCTGGGGGCCGGCCAGATCGC 3101 29 96.6 36 ........................G.... GTACTCGCCTTCGTGCGCCGCGATCACCACCGGCAG 3036 29 100.0 37 ............................. CCGTCGAGCAGGATTGCGTGGCTCTCCCGCATCCACG 2970 29 96.6 36 .................T........... CGGCGGGGATTGCCGCCGGGTCGCCGTGTCGGCCGG 2905 29 100.0 35 ............................. GAGATCGTGCCCGGCCTGTGGGTCCCGGAGTACAT 2841 29 100.0 36 ............................. CGCCGCGACGGGGAAGTGGCGGGCGGTGCCGCTCAC 2776 29 100.0 36 ............................. GTGGCCCCGCGGGCGGCTGGTCTATCAGGTGTCGGT 2711 29 100.0 38 ............................. CTGGTGTCGTCGGACGGGGAGGCGTCCGAGCTGCCACC 2644 29 100.0 36 ............................. GGGGAACGCAACCCCGGCCTACCCGGCCCCGTTCAA 2579 29 100.0 36 ............................. CAGCCGCCGCGGGCCGTGTCGGGGTGCCGGGCTCGC 2514 29 100.0 36 ............................. GGTGCTGGCCGCCAGTGAGATCACCTCCGAGACCAC 2449 29 100.0 36 ............................. GCTGTCCATTGCCGCCGCGATCCGGGGCCCGGACGC 2384 29 100.0 37 ............................. TGGTCGAGGCGCTGGCCGCGGCTGGCGGCGCCGGGTA 2318 29 100.0 37 ............................. GTGGCCGGGGTTGCGTCGCGGCGCGCGCCGTACTCGG 2252 29 100.0 34 ............................. ACGAGTTGGAGCCGGTGACGCTGGAGAAGGACGC 2189 29 100.0 38 ............................. CGCGGCGTCGGGCCGGCCGTGGTAGGCCATCGCGTCGG 2122 29 100.0 36 ............................. GCAGCAAGGCGCCGACCTGGAGGCGGAGTTCTCCAG 2057 29 100.0 36 ............................. GCGGCTGAACGAGGCGCTGGGGGAGCCGCTGCCGGT 1992 29 100.0 36 ............................. GCGTGCCTAGGACGTAAAAGTCGTAGCGCGGATCGT 1927 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 97.2 36 GTTGCGAACCCTCCAGGGGTGATGACGAC # Left flank : CGTGCTCGGCCTTCACTCGGATGTGAGCGGTGGTGTAGGCGACGACGTCGCCCTGCCAGTTGCCGGACTCCTCACGGAGCTTGCCGGACACCGGGTGAGCCTTACCGGAGCGGTGGGCGCCTCGGTCGCCACAGGTCACGGTCGGAGCCTTCTTGTGGCGGAGCGACGGGCCGAGAACGTCGGCCGTCCGGCCGCAGTCGCAGTTGCAGCGCCAGTAGGTGATGACGTCCCCACCAGGACGGTTGTGGGTGTGAGCCTCGGCGACGGACAAGAGCGCCGTAGCGGTTGCCGGACAGGACCTCACACTGACCCAGCAAAGCGTCAACCGCGTGCTGTCGCGGCACGGGCGCCGGTCGAGTGAGGCGCCGCGCGCTTGAAGTGCTGGCGCATCTTCCGCCGATCCCGGTGCAGCCCGAATCGAATGTCGTTAGTCTCCGCGGCCGTCCTCACTCTGGAGCGGCAGCGCTGAAAGACCTCCCTGGCTTCGTCGGCTTCATCAA # Right flank : CCGAGCATAAAACCCTTGCTCGGCACAGTGTTCAAGTCACCATCAGGGAGAGGTTTTGCAGCGACTCGCCGGTAGTGCATTCCCGCAGGTCAGAACGTTTTGTGTGGCGAAGCGTGTGGGATTCAAGCTGACTGGGTGCCGACAGCAGCGAGGACGTAGTTCGCGTGCCGTGCGTGGTCGAGCTGCCGGACGGTGGGTTGGCCGATAGCACATCGGAGGAGATGGAGGGTTGATTGTCTTGATCACAATGTTTGGCCGCTTGGCAGCAACTATGTTCCCCTACACGGCAGTTGGTGGGAGTGCCGTATGGGAGCGGTAAGACTGGAGGATGCCAGGGTGCGGATCAGGGTGGACGTTGTCCCGGATATGAAAAGTCTGCGGTGGGAGGACGTGCATGGTCCGGCTCGTGCCGTGGTGTACGGGCTGCTGGAGAGCAAGGACGAGGCCCTGGCCCGTTCGTTGCACGACGAGGGGTGGGCCGGCCAGCCGCTGAAGCCGGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCCAGGGGTGATGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //