Array 1 1255-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUB010000107.1 Acinetobacter baumannii strain A2 P_contig000107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1254 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 1194 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 1134 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 1074 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 1014 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 954 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 894 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 834 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 774 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 714 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 654 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 594 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 534 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 474 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 414 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 354 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 294 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 234 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 174 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 114 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 54 30 93.3 0 ............................AG | ========== ====== ====== ====== ============================== ============================== ================== 21 30 96.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GCATCAAGTAGATCAGCAGTTACCT # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1768-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUB010000469.1 Acinetobacter baumannii strain A2 P_contig000469, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1767 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 1707 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 1647 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 1587 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 1527 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 1467 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 1407 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 1347 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 1287 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 1227 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 1167 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 1107 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 1046 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 986 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 926 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 866 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 806 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 746 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 686 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 626 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 565 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 505 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 445 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 385 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 325 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 265 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 205 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 145 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 85 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 29 30 94.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GTATTAAAACTGCTTATAAACTTTCTTAAAT # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //