Array 1 373333-372486 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATJ01000001.1 Paenibacillus polymyxa strain NCTC7575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 373332 32 100.0 35 ................................ ATAGAGTCGATGACGTTGGCAGCCTAAAGGACATT 373265 32 100.0 35 ................................ AAGGAGACGTTTGGTGTCAAAGCTCTGAATACAGG 373198 32 100.0 37 ................................ CTTAGAGAAGGAAGCGACCAGTTCACGGGTGATAGCC 373129 32 100.0 37 ................................ TTAGAACCCCGGCCGCCCTTGACTACACGGTAACGTC 373060 32 100.0 38 ................................ AGCTAAATAACCTTTTGGTTCTTTGAAATGCGCAAGCA 372990 32 100.0 38 ................................ AGTTAGGAGGGAAGTAACATGAGTAAATTGACGCCAAA 372920 32 100.0 34 ................................ CGTTACAAAATCCTCGGTCCTGCTGAACGTGTGG 372854 32 100.0 36 ................................ TATTTCATTGCTCCCGTAACCTGTGCTGACTGTATA 372786 32 100.0 35 ................................ GCAAGAGGAGCTCGACCAGGTAATCGCGGATCGTA 372719 32 100.0 35 ................................ CCTATACCATATGGATTCGTTAGTTTTATTATATC 372652 32 100.0 36 ................................ CTGTAAGATTAATGTCTGACCATGTCATGAATGAAA 372584 32 96.9 34 ....A........................... TACATCCCCAGCGGCCTGAGCGTCCTTGAGCAGC 372518 32 81.2 0 ..........A.A........AC....A...T | C [372493] ========== ====== ====== ====== ================================ ====================================== ================== 13 32 98.3 36 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Left flank : CGCTGAAAACAAACAGAGATAAAACATATCTACGCATGAAAAGAGAAGTTATGTCGCTGAACGAACTGGAACATGCGTACATAGCCAACAAACAAGACTATCAAGCCCGCAAAGCGTTTTTCAAGAAAAACAATCTATTTCCCTTTTCTGTGCATGTTTATGGGTAATTCGAGGTGCTTTATAGTCAAAAAAGAACAATATATAAATCTATTATATCGTATAAATAAGAGAGTTGTAGTTTTTTTGTGGTAAAATAGTATCTAAATTAAGTTGATTGACCTGCTCTTCAAAAATGGAGTGACCATAGGAAAGATGATTCGGTGCGAACCCCAAGCGCACATAAAAATCCCGGGTCCTTCGCACCTCGAAAATTGTCGGAAAGTATCGAATCGGCTATCTATCCGCAAAAGTCAATAGTTGATTCAAGCTTATTGGGCATCATTTTTTGCGACAATGCGTGGAAATGATATCCTATGGATATGAATTACTGCATTTTCGCT # Right flank : CGCGAGCAATTGCAGATTTTATGACTACTTTACGTAGTTACTCTTTTTAAGGGAGTATGACGTATTCTCGCAAAGTATCGATACAAATCTTATTTAACCTGGCTCCCTTTTAAATCAGGAGAGCCTTTTTTGTCGTGATTTTTATAGTCAGAAAAACGAGTTTGATATGGCGACAGGTGATATTAATTCCAATCCAATAGATGTTTCCAACTACGGGATTTATGTTAACAATTATGAGCAAGGAACTACTTCTCTTCCAGAAAACATAGGAGCTCGCAACTCGACCAGAGCTGAAAAGGCATAGGCGCTTGTAGTTCATGCCAAGAAGGGGCCTGATATCAAGTTAAAGTACCGGCCAGACGTAATAAAGATACATTAAATATGAAGCTAGGAAAGCACAAGTTAGTATTCAGCCGTGTTTATTCACCAAGGATAAGAAAATGGTCTTATTTTCACAGATTACAAATAGAAAATCTTTTGCATAATATATTCCAATAGAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 375964-375665 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATJ01000001.1 Paenibacillus polymyxa strain NCTC7575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 375963 32 100.0 34 ................................ AGGTCCATCGACTGGTTCCTCTTTGATTTCCTCA 375897 32 100.0 35 ................................ TATGAGTTAGGGGAGGCCATCGTCCCGGACGCAGA 375830 32 100.0 34 ................................ AGTCACAATGATACAACCAGCAGTAACATTCATC 375764 32 96.9 36 ...................T............ TTTTGTCATGGGTTGATCATCCTCACTAATAATATT 375696 32 90.6 0 ........T..............A.......G | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 97.5 35 GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Left flank : GGATAAGGCTTTGTAACGCGTGCTGTCGCTCCTTATGTAGGAGCGTGGATTGAAAGGTATATAGGGGTATAGGGTAAGAGGCTGTAGCTCCCTTTATGGGAGCGTGGATTGAAACGGCTTGAGCTTCCACGCCTTCATTTCCTCTTTCTGGGTCGCTCCCTATATGAGAGTGTGGATTGAAACAGACGCATGGTGTAATAACCCCAAGTAGGCTGAAGAAGTCGCTCCCAGTATTGAAGTGTGAAATTTAAACTCAGCTCGCTATACTCACATCCGTAAGTTCGTTGCTTCTCACAGGGTGATGTACAATAAACAATTTAACCTTTAATTTGGTGCGAACCCTAAGCGCACATGAAATCCCCAGAACATTCGCACCTCGCGCCAGACAAGGAATTCAATGATTTTGGGGTAAGATTTTTAACATTTATTGATGAGTTGAAAAGAGATTCGTGAAAAAGCGTTTACAAATCCTTGCTGGATAAGGCTTTGTAACGTGTGCT # Right flank : TATGTATTTCTCATACCGCACATATAGCACAGCTATGACGTTCCTCATTTTTCATTGAAATACACAAAAAGGTTTGCCCTAGTACTAGGCAAGCCTTCTTGTGTGCTGGTTGTAATATGGAAATAGGTTCAAAATGAACTAACATTTTTATAGACGTGGAACTGTTCGGAACACCACTCTAAAAAGTGAAACATAAAAAAGAAGCCCGTTTTGAAAACAGACTCCTTAATGTACTCCCACGTTAATATGCACAAACCACACTATTCTGTTTCTTCAAACTGCATTAACACGGAAATGTCTTTGATCTCCAGAGCATGAGCGATCTTTTCAAGCATAAGCAAGTTTACTTCTTGTCTCCCATTTTTACAAAGCTGTGAGATTCTTGCTTGATTAACACCTGATTTTTCCGAAAGTTGCATTTGCGTCATATTGCGCTCTTTTAACACTTCTTTAAGCCTTATATTTAATTTTAGCAAGAAAAAGAAACCTCCTAAAAACTC # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 384997-384763 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATJ01000001.1 Paenibacillus polymyxa strain NCTC7575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 384996 32 96.9 36 .......T........................ AGAAGCCAATAACCATTGGGCGCTTGGAATTTTGTA 384928 32 100.0 36 ................................ GGGCCTCTGTCTGGCTCAGTGGTGACTGATATTATC 384860 32 96.9 34 .............................G.. ATCCTATCTTCTTCCCTTCTTATTGGAGTCTATG 384794 32 81.2 0 ........C...A.G.....A.AC........ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.8 36 GTCGCTCCTTATGTAGGAGCGTGGATTGAAAC # Left flank : TGAGTATATTGAGAATTATAATGACTTAAAAAAGAGCCTAACGGAGAAATACGGCAAGCCTAGCAGTGATGATACCCTTTGGAAGGGAGATTTATACAAAGGCACGCCAAGCCAATGGGGAATGGCTGTAGCGACAGGCGAATTGCATTATCAGACAACTTGGGAGACAGAAGATACAGAAATTTTGCTTGATTTACAAGGTGATAATTTCGAGCCCCGCCTGAGTCTAGTGTATGGTAGCAAGGAACTACAGCATTTGAGTGAGCAGCAAAAGGATCAGGAATTGAAAAAGAATTTATAACAGTATAAGGCATGGATTTCATAGGCTTTAAGTGCGAACCCCAAGTGCACATGAAATCCCCGGAACATTCGCACCCCGCGCCAGACAAGGGATTCAGCGATTTTGGGTTGTGTCTTTTTACATTTATTGGTGAGTTGAAAGGACATTCGCGAAAAAGCGTTTACAAAGCCTTGCTAGATAAGGTTTTGTAACGCGTGTT # Right flank : CAGCCAGAACTGGCGACTCGTCACTCTCTGGACGTGAGAGGTACAACAACCAATAATTGTCCTTTGATCTTGTGAAAAAATAAAATAACCCAAAAGCACCGAAGGTTCTCCTGAAACGGGAACTTGGGTGCTTTTTGGCTTTTTGTATTTTAGGTTAGCGAAATTCTCCAAGTGATAGAGAACGTATGCGAGAATAATGTAGAATCATGGAAAATAATCCTGTAAAATTTTCCATCATAGAGTATAATGTTCTATAAAAGAGATACTTTAGCCTATTTACAGTTGTTTTTTCTCGGGAAATAGTTCATTAAAACTATATAATTAGTCATGATGAGAGGTGAGTTTATGAACTACAAAAATCGCATTTTACCGCCTGAACTGAAGGATGTAAAAGAAAATTTAATAAGTGGCAGAAAGCAATCAAAAGAAAAGAAGCCCTACGAGATCAAGATTGTCACCCCCATGTTCGGAGGCGGCAACGAACCGGGGGAATTGGATGA # Questionable array : NO Score: 6.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //