Array 1 6345-1577 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIE01000003.1 [Collinsella] massiliensis strain An5 An5_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 6344 29 100.0 32 ............................. CGTTCGTGCGCTCGCTCTTCGATGCGGTGTTC 6283 29 100.0 32 ............................. ACGAGCGGCTGGCGGCGCGCAGACGTTCCCTG 6222 29 100.0 32 ............................. ACCCTAGGCTCCTACGCCGACGGCACGCGCGA 6161 29 100.0 32 ............................. CGGTACCTCGGCGTCGAGCCGACGAGCTACGC 6100 29 100.0 32 ............................. TCGAAGACGCCGACGTAGGTCGCGTCGTTCGG 6039 29 100.0 32 ............................. GACCTGCTCGCCCGCGCCGGGTTCGACTCCGC 5978 29 100.0 32 ............................. CCGACCAGAGCCCGGTCAGTGGATATGTAGTA 5917 29 100.0 32 ............................. ACATCGGCCACCGCCGCCGTAGCCGCGCCCTG 5856 29 100.0 32 ............................. TCCCACACGAGGTCGTCCGCGTCGGCGATGTC 5795 29 100.0 32 ............................. CCGGCGCTCGCGTCGGCTCCGGTGAGCCCCAT 5734 29 100.0 32 ............................. GAGGCGGACGCATCCGGCTCCAAGCTCGCCGT 5673 29 100.0 32 ............................. CTCGACACGGAGCTGAAGGAGTCGGGTAGCGT 5612 29 100.0 32 ............................. CTGCGCCGCCTGCTGGGCGGTTATCTGCCCGG 5551 29 100.0 32 ............................. CACCCGGACGGCAGCGAGCAGTCGCAGGCGCA 5490 29 100.0 32 ............................. ATGGGCACGGTGAGCTTCACCGTGAACCGGGG 5429 29 100.0 32 ............................. GCGACGCAGGCGACCGTCACCATGACGGCGTA 5368 29 100.0 32 ............................. CTCGCCGACGCCATCGAGCAGCCGCTCATGGC 5307 29 100.0 32 ............................. TGGCGCTCTCGCGTCGTCACCGACGTCACGCA 5246 29 100.0 32 ............................. CTCGCCGACGCCATCGAGCAGCCGCTCATGGC 5185 29 100.0 32 ............................. TCCGGCAGCTGCCGCAGCGAGAGGCACGGTAA 5124 29 100.0 32 ............................. TGCTCGGCGAGCCGTTCCAGCGACGCGCAGGC 5063 29 100.0 32 ............................. AAGGGCTCCAGTCCCCAGGCCGTCACCTGCAG 5002 29 100.0 32 ............................. GCCGCTTCGGTAAGCTCTTCTGAATCAATCTC 4941 29 100.0 32 ............................. AGTGTAGCAGTTTAAGCGCGTTTCATCAGTTT 4880 29 100.0 32 ............................. CGGTTGAGGTGAGATGCAGACGTGAAGCGAAA 4819 29 100.0 32 ............................. TACCTCCGTGAGTGGCGTAAGTATTACGAATG 4758 29 100.0 32 ............................. TACGAGTATCACGAGGGTGTAGTCGCAAAGTC 4697 29 100.0 32 ............................. ATCCTAGGACTCATCTCCGGTGGTGCCACCCT 4636 29 100.0 32 ............................. AGCCCCGGGCTCGCGCCCATCATCTCCGCCTT 4575 29 100.0 32 ............................. TCACCCACGAGCGCCCCGACAGTTGGGAGCGC 4514 29 100.0 32 ............................. CTTCTTGACGAGCGTGAAAGCCTGGGCAAGAG 4453 29 100.0 32 ............................. CGATCGCGCGACCTCCTCGTATCTGCTCGCTC 4392 29 100.0 32 ............................. CTAATCCTCGGCGGAAACTGGCCGCTCGGTGA 4331 29 100.0 32 ............................. ACCATCACGCGAAAACTGCGCGAATACCACGC 4270 29 100.0 32 ............................. AGCGCGCCCTCCTCCGGGATGTGCCGGAGCTC 4209 29 96.6 32 ............................T CCCAGACGGGTATGCGCGATATGGGGCGCAAG 4148 29 100.0 32 ............................. TTCACGCCGACCTCGACCTTGCCGTGCCTCCA 4087 29 100.0 32 ............................. ATGAAGGCACGTGTCATCGACGAGCGCGACGC 4026 29 96.6 32 ............................T ACACGACCGCCGCGCGTCGTGATGCGTATATT 3965 29 100.0 32 ............................. AGCGAAATGGAGTTGAAAGATTACTACCGTAA 3904 29 96.6 32 ............................T TAACGCGGGCGATGAAAATGGCCAATAAGGAG 3843 29 100.0 32 ............................. CATAAGCAGTCGGTCGCATGCAGTTCGCAGAC 3782 29 100.0 32 ............................. CATGCCAGGAAGAATTCATGCCCTCCGATATA 3721 29 100.0 32 ............................. GGTCACCGGAATCGAACGCATGGATCCGGAAA 3660 29 100.0 32 ............................. GAGCAATCGCATTTGATTCCAGATAAAGCCGA 3599 29 100.0 32 ............................. AATCCAGACGCCCATGAGCTCTTTCGTGCTTT 3538 29 96.6 32 ............................T CAAGGAAAACGGCACTTGAACAATATGAAGTT 3477 29 100.0 32 ............................. TACCAGGCGTTCTCGGCCGAGGCCATCATGGC 3416 29 96.6 32 ...........G................. ACGTAGGGCAACGCGTTAAATCGCTGCTAGAT 3355 29 96.6 32 ...........G................. GCTCCCACGTCTCGCCGCCGTCCTCGCTCACC 3294 29 96.6 32 ...........G................. AGCCCCTGCCGCTCCTCGTTCTCGATGTACTC 3233 29 96.6 32 ...........G................. TACAAGGTCGAAGACGACAACGCCATCATCCT 3172 29 100.0 32 ............................. AAGCTGGTAGTGGGCTATAACGTTGTTTTCGA 3111 29 96.6 32 ...........G................. AGGGGTGCTCCGCGATACGAGTGCTTCGTCGA 3050 29 96.6 32 ...........G................. TACATGCCCGGCTTCTGCGCATGGATGGCCGG 2989 29 96.6 32 ...........G................. ACACCTCTAACGACCGAGACATGCCGAACGAG 2928 29 96.6 32 ...........G................. TCAGCCGCCCTCACGTCGCCGCCGACGGCCTT 2867 29 96.6 32 ...........G................. GGCAGCACGACAGCCTGAAGCGCGCGATCATG 2806 29 96.6 32 ...........G................. GCCGTGGCGGAGACGATGGGATACGGCTCCTC 2745 29 96.6 72 ...........G................. CGGTTCGACGGCGAGCCCGACTGCTTGAGGGGATGATCCCACGGCGGCGGAGATACGCGCGTACGCGGAGAG 2644 29 96.6 32 ...........G................. AGACCCGGGCTCACCCCCATCGTCTCCGCTTT 2583 29 96.6 32 ...........G................. GTGCGGAACCGCGGCGGTCGCATCGTGAACAC 2522 29 93.1 34 ...........G................A CGTCTAGGTCGATGGCGAAGACGCCGCCGGACGG 2459 29 96.6 32 ...........G................. GACGAGGTCGTTTCGCTTCTGCCCCTGCGTCC 2398 29 100.0 32 ............................. GCTTGCGGCGCGGTCGTGACCGGGAAGACCCG 2337 29 96.6 32 ...........G................. TACACCGATAACTCAATCAGCGCAGACTACAG 2276 29 100.0 32 ............................. GACGTGCGCACGGCGGCGGTGACGCTCACGCT 2215 29 96.6 32 .........................C... GGTACCGACCCCGTGGGGATACGCCGTCGTGC 2154 29 93.1 32 .....T.....T................. CCGCCGAACCCGAACTACCCGGATGGCGAGCC 2093 29 93.1 32 ...........G..............T.. GGGAAGTCAAGCTGGGTAATCTCCGGGCTGTC 2032 29 96.6 32 ...........G................. ATCCGCATGCCGTACCGCGAGTACGCGGCGGA 1971 29 93.1 32 ...........G....T............ GCCTTGGCCACGCCGGAGTTCTTGGGGTTGGT 1910 29 89.7 32 ...........GT.T.............. GTGTTGATCTCCGTCACCTGGATGTAGGAGTC 1849 29 86.2 32 ...........TT.T.............T GGCGCGGGGACGCGCATGTACCAGAAGATCAT 1788 29 93.1 32 ...........G....T............ ACGTTGCAGAAGACCTTGCGCTTCGTCTCTTG 1727 29 82.8 32 ...T.......GT.T.............G TACGACACCGAGACGGCTGAGGAGGTCGCCGA 1666 29 89.7 32 ...........G..T.....A........ TTCGACTACGACATTCAGAAGGTGCACGATGA 1605 29 82.8 0 ...........G......A.....G.T.G | ========== ====== ====== ====== ============================= ======================================================================== ================== 78 29 97.8 33 GTGCTCCCCGCACACGCGGGGATGATCCC # Left flank : GTTGTGGGACGAGAAGCTCGGCGAGGTTGCGGCGGGCACGCTATATGCAGACGCTGCGGAGGGTGATGCGTGATGGTCGTGATGGTGCTGACTGCCTGTCCGACGGGCGTGCGCGGTGATTTGACTCGATGGTTGCTTGAGATTGCTCCCGGGGTGTTTGTAGGGAGGCTGTCCGCGCGGGTGCGGACGCGGCTTTGGCTCCGTGTGTGCTCCCTCATGAAATCTGGCAGAGCGATCATGGTTTATAGCGCACGTAATGAGCAGCACCTTGAGTTCGAGGTGTTCCAACCCGACTGGAAACCGGTGGATTGCGATGGGGTGAGACTCATCAAACGTCCCGCCGGCACCGATGATGCGACGCTGATGGGGTCTTTGCCATCGGGTTGGAGCAGCGCTTCGAAGTATCGGAGGGCGCGTAAGTATCGCGGTTGACCCAAACTTCGCTCGATATAATGAAGCGGAATACTGAGGCGCCCCGCGATGTTAGCAGGTATCGAAGT # Right flank : TAAAAAAGAAAAAAATGGGATGTAATCTAAAAAGCGCTCGAATCCCATTCCCGTTTCGGATAGGAGTTCGAGCGCTCCTATATTTCAGCACTGCCCACGCGTACGGAGCAACCCCTTATCGCAGCCCCGTCATCCTCAAACCACCACCGCAAACGCAATCGCGAGGTCGGCTTCGTTGCTGATGCTCACTAATATATGGCGCACGCCGGCCTGCTCGCAGATGCGCGCGAGCTCGGGCGTCATCTGCACGTGGGGGCTGCCGTCGTCCGCGGCGAGCGTCTCGACCAGTCTCAAATCGAACGTGCCTGCCTCCGTCAGATGCGCGAGCGCTTTGAACACGGCTTCCTTCGCCGCGAACCTGCCCGCCAGATACGAGGCACGCCCCGCACCCCGCTCCGCGGCCTCGGCCTGCTCGCGCGCCGTGAACGTCCGCGCGGTGAATCCGTCCGCCTCGCGGTCGAGACGCCCGATCTCGCTGATAGTGACCGCGTCGACCCCGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //