Array 1 361845-363276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYAH010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 685 A NODE_2_length_542209_cov_61.2452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361845 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361906 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 361967 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 362028 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 362089 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362150 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362211 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362272 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362333 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362394 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362455 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362516 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362577 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362638 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 362699 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362761 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362822 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362883 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362944 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363005 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363066 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363127 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363188 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363249 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379408-381555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYAH010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 685 A NODE_2_length_542209_cov_61.2452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379408 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 379469 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379530 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 379591 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 379652 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 379713 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 379774 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379836 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379897 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 379958 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 380019 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 380080 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 380141 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 380202 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380263 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380324 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380385 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380446 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380507 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380568 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380629 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380690 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380751 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380812 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380874 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380977 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 381038 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 381099 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 381160 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 381221 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 381282 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 381343 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 381404 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 381465 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381526 29 96.6 0 A............................ | A [381552] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //