Array 1 622569-623329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822019.1 Streptococcus thermophilus isolate STH_CIRM_772 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 622569 36 100.0 30 .................................... TAATCAGCAATACTTTCTTAAATGCACTAG 622635 36 100.0 30 .................................... TTGAAGTCTCAGAAAAAGTCCGTGAGTATT 622701 36 100.0 30 .................................... CGGGACCCATGCAGACTGATAGAGTTACGG 622767 36 100.0 30 .................................... GGGATATCTATTCCACTACAGTAGTTATGG 622833 36 100.0 30 .................................... TAACCCCTCTTAATTTTACCCTTCCGCAAC 622899 36 100.0 29 .................................... GCATTAGACAGATACATTGAAAGCCAACT 622964 36 100.0 30 .................................... GCAGAATCAGCAAGCAAGCTGTTTGTTACT 623030 36 100.0 30 .................................... AAAGATGAATTAGATTTACTCAACCAAGAA 623096 36 100.0 30 .................................... TTTCTTGACTACCTGTCCTGCTGGGCTGTA 623162 36 100.0 30 .................................... AAAGACATGAAAAAAGCTCAACAACTACTC 623228 36 100.0 30 .................................... TCTAGCGCTTCATCAAGCATGGCAAAGCCT 623294 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAAGGCTCTTTGTCAACTGTAGTGGGTAGATGAAAAGCTAAATTCTTGAGAGGACCAGTTTGGTCTTCTCTTTTTTAATATTTACTGCCATCAAAATCCGTTTCTTAAAGTTTTCAAAGTTCCTGAAGCCAAAGGCATTTCGCTTAATGACCTTGATGAGATTGTTCGTTGCTTCCAGTTTTGCGTTTGAATACGGCAGTTCGAGGGCATTGATAATCTTGTCTTTATCTTTCAAAAAAGTTCTAAAAACTGTCTGAAAGATAGGGTGTACGCTGGAACTCGTCTCTTCAATGAGGTCAAAGAAATGGTCCGAGTTCTTCTCTTGGAAATGGAAAAGTAAAAGTTGGTAGAGTTCATAATGTTCTCTCAGTTCTTGAGAGTATGACAGTAGCTTTTCTAGGATTTCCTTGTTGGTTAAATGCGCACGAAAAGTCGGACGATAAAAGCGTTTATCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 850129-850528 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822019.1 Streptococcus thermophilus isolate STH_CIRM_772 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 850129 36 100.0 37 .................................... ACCCCAACTGGTTTGTAGGTTATTTCCATAATCACCA 850202 36 100.0 37 .................................... TCGTCCATAATTGCGTATGATACATTATTGGTTTTAA 850275 36 100.0 38 .................................... ATTTTCCATGCTAGGCTCATTACTTGTGATTTCATTTT 850349 36 100.0 36 .................................... TCTGCGTGCATAAGCAGTAACCCAAACACCCCAAGG 850421 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 850493 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 97.2 37 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCTTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAAGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TAAAAATTTTGAAAACAGTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAACCGCATTAAGGGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTATTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 930197-929192 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822019.1 Streptococcus thermophilus isolate STH_CIRM_772 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 930196 28 100.0 33 ............................ TGGTTGTCTGCTAAGTCAGCGCTGAAGAATTCG 930135 28 100.0 33 ............................ TATGCAATGGTTAGACTTACCTATTTCGGTCCT 930074 28 100.0 33 ............................ TATCTGGGTCAACGTGGTACGGCTGTTCAATAT 930013 28 100.0 34 ............................ CGGAGCGGTGTTTCAAGTATAGTCAATAAATCTG 929951 28 100.0 33 ............................ TGACATATACCGTAAGTGTTCAATCTAGTTTTT 929890 28 100.0 33 ............................ TGGCATTTGGCAGATTAAATGTGATTACTTAAC 929829 28 100.0 33 ............................ CACACAGTACACTCTTTCATTTGATGTTATGCC 929768 28 100.0 33 ............................ TGTAACGGTCATACTAACGCCAAACCATACATA 929707 28 100.0 33 ............................ CGGATGAGTATATCTACGTTGTCAGAGGAGCAT 929646 28 89.3 33 ............T.............AT CAACCAAGTGGACGTTGAGGTATTTGCTTACAT 929585 28 100.0 33 ............................ CAAAATAATCACTGATTGACAAACTAAAGTTAG 929524 28 100.0 33 ............................ TACTACTTATGCAATTATGATGATAACGGAAAG 929463 28 100.0 33 ............................ CGGTCAACACATCTCCGACTCGTTTATAGAAAC 929402 28 100.0 33 ............................ CAGAATACCGTGGTTTGAAATCATTCTACAACT 929341 28 100.0 33 ............................ CAACGTTGGCAACACAATTTCAAACTATTTAAA 929280 28 100.0 33 ............................ TGCTTCTGTATCAGTTGCTACCACATCGAAGCG 929219 28 92.9 0 .G........................T. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.0 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCAATCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATTGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTTAATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACCTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTCTCTTTATATGCCCACCAAAAAAAGCCAGTGGCTCTTTTTAAATATCATCTTAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATTATTCAGTTCTTTATCTTTGCTAACCTTATCAGCCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATATCGCTTTATCCGAAGTTTGGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //